Locus 2148

Sequence ID 2L_DroMel_CAF1
Location 5,791,102 – 5,791,214
Length 112
Max. P 0.952417
window3472 window3473

overview

Window 2

Location 5,791,102 – 5,791,214
Length 112
Sequences 3
Columns 112
Reading direction forward
Mean pairwise identity 93.43
Mean single sequence MFE -22.43
Consensus MFE -21.62
Energy contribution -21.73
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.23
Structure conservation index 0.96
SVM decision value 1.42
SVM RNA-class probability 0.952417
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5791102 112 + 22407834
GAGUGCAUUAAACUUCUAACAGCAAAUUGCUUUUAAUUCCUAAAGCCAGUCAAGAGCUCUUCAGAAUUAAUUGCACUUUAAAAAAAAAUCCGCGUAAACUGUUUUGCAAAAU
(((((((((((..((((((.(((..((((((((........)))).)))).....))).)).)))))))).)))))))...............(((((....)))))..... ( -17.30)
>DroSec_CAF1 28157 111 + 1
AAGUGCAUCAAACUUCAAACAGCAAACUGCUUUUAAUUCCUAGAGCCAGUCAAGAGCUCUUCAGAAUUAAUUGCACUUGAAAA-AAAAUACGCGUAAACAGUUUUGCGAAAU
(((((((.............(((.....))).(((((((..((((((......).)))))...))))))).))))))).....-........((((((....)))))).... ( -25.00)
>DroSim_CAF1 30286 110 + 1
AAGUGCAUCAAACUUCUAACAGCAAAUUGCUUUUAAUUCCUAGAGCCAGUCAAGAGCUCUUCAGAAUUAAUUGCACUUGAAAA--AAAUCCGCGUAAACAGUUUUGCGAAAU
(((((((.............(((.....))).(((((((..((((((......).)))))...))))))).))))))).....--.......((((((....)))))).... ( -25.00)
>consensus
AAGUGCAUCAAACUUCUAACAGCAAAUUGCUUUUAAUUCCUAGAGCCAGUCAAGAGCUCUUCAGAAUUAAUUGCACUUGAAAA_AAAAUCCGCGUAAACAGUUUUGCGAAAU
(((((((.............(((.....))).(((((((..((((((......).)))))...))))))).)))))))...............(((((....)))))..... (-21.62 = -21.73 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 5,791,102 – 5,791,214
Length 112
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 93.43
Mean single sequence MFE -26.97
Consensus MFE -25.31
Energy contribution -25.53
Covariance contribution 0.23
Combinations/Pair 1.07
Mean z-score -1.88
Structure conservation index 0.94
SVM decision value 0.63
SVM RNA-class probability 0.806148
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5791102 112 - 22407834
AUUUUGCAAAACAGUUUACGCGGAUUUUUUUUUAAAGUGCAAUUAAUUCUGAAGAGCUCUUGACUGGCUUUAGGAAUUAAAAGCAAUUUGCUGUUAGAAGUUUAAUGCACUC
..(((((............)))))...........((((((.((((((((..((((((.......)))))).)))))))).(((.....))).............)))))). ( -23.00)
>DroSec_CAF1 28157 111 - 1
AUUUCGCAAAACUGUUUACGCGUAUUUU-UUUUCAAGUGCAAUUAAUUCUGAAGAGCUCUUGACUGGCUCUAGGAAUUAAAAGCAGUUUGCUGUUUGAAGUUUGAUGCACUU
.....((((((((((((....((((((.-.....))))))..((((((((..((((((.......)))))).)))))))))))))))))(((......)))....))).... ( -29.50)
>DroSim_CAF1 30286 110 - 1
AUUUCGCAAAACUGUUUACGCGGAUUU--UUUUCAAGUGCAAUUAAUUCUGAAGAGCUCUUGACUGGCUCUAGGAAUUAAAAGCAAUUUGCUGUUAGAAGUUUGAUGCACUU
..(((((............)))))...--.....(((((((.((((((((..((((((.......)))))).)))))))).(((.....))).............))))))) ( -28.40)
>consensus
AUUUCGCAAAACUGUUUACGCGGAUUUU_UUUUCAAGUGCAAUUAAUUCUGAAGAGCUCUUGACUGGCUCUAGGAAUUAAAAGCAAUUUGCUGUUAGAAGUUUGAUGCACUU
..(((((............)))))..........(((((((.((((((((..((((((.......)))))).)))))))).(((.....))).............))))))) (-25.31 = -25.53 +   0.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:51 2006