Locus 2147

Sequence ID 2L_DroMel_CAF1
Location 5,788,724 – 5,788,816
Length 92
Max. P 0.979607
window3471

overview

Window 1

Location 5,788,724 – 5,788,816
Length 92
Sequences 3
Columns 94
Reading direction forward
Mean pairwise identity 95.02
Mean single sequence MFE -39.90
Consensus MFE -36.45
Energy contribution -36.23
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -3.58
Structure conservation index 0.91
SVM decision value 1.84
SVM RNA-class probability 0.979607
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5788724 92 + 22407834
UCACCCAUUGAAUCCAUAGAAGGGCUCAUCCCAGCUCAGC--AGUUGGUCCUCGCCACUUGACUUCUCGAGUGGUGAUAGGAUUACGGUUGGGG
...((((((((((((......(((......((((((....--)))))))))(((((((((((....)))))))))))..))))).))).)))). ( -35.90)
>DroSec_CAF1 25778 93 + 1
UC-CCCAUUGAAUCCAUAGAAGGGCUCAACCCAGCUCAGCUCAGUUGGUCCUCGCCACUUGACUUCUCGAGUGGUGAUAGGAUUACGGGUGGGG
.(-((((((.(((((......((((.((((..(((...)))..))))))))(((((((((((....)))))))))))..)))))...))))))) ( -43.20)
>DroSim_CAF1 27885 93 + 1
UC-CCCAUUGAAUCCAUAGAAGGGCUCAUCGCAGCUCAGCUCAGCUGGUCCUCGCCACUUGACUUCUCGAGUGGUGAUAGGAUUACGGGUGGGG
.(-((((((.(((((......((((......(((((......)))))))))(((((((((((....)))))))))))..)))))...))))))) ( -40.60)
>consensus
UC_CCCAUUGAAUCCAUAGAAGGGCUCAUCCCAGCUCAGCUCAGUUGGUCCUCGCCACUUGACUUCUCGAGUGGUGAUAGGAUUACGGGUGGGG
...((((((((((((......((((......(((((......)))))))))(((((((((((....)))))))))))..))))).))).)))). (-36.45 = -36.23 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:49 2006