Locus 2144

Sequence ID 2L_DroMel_CAF1
Location 5,784,863 – 5,784,983
Length 120
Max. P 0.671343
window3466

overview

Window 6

Location 5,784,863 – 5,784,983
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 91.06
Mean single sequence MFE -22.10
Consensus MFE -17.49
Energy contribution -17.17
Covariance contribution -0.33
Combinations/Pair 1.10
Mean z-score -2.35
Structure conservation index 0.79
SVM decision value 0.29
SVM RNA-class probability 0.671343
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5784863 120 - 22407834
AAUAAACAUUCAUUACAAGUGGUCAAUUUGACUUGGUUAUUUGAAGUAUCGAAAUAUUUUGUUCGAAGUUCAAUACCAAAUGCGCCAAGUAACUAUAAAGCAAUAUACUUUAAUGAAUAA
.......((((((((.((((((((.....)))(((((...(((((.(.(((((........)))))).))))).))))).(((................)))...))))))))))))).. ( -25.29)
>DroSec_CAF1 21927 118 - 1
AAGAAAUUUUCAUUUU--GUGGUCAAUUUGACUUAGUUACUUGAAGUAACAAAAUAUCUUGUUUCAAGUUCAAUACCAAAUGCACCAAGUAACUAUAAACCAAUAUACUUUAAUGAAUAA
........((((((..--((((((.....))).((((((((((..(.(((((......))))).)..((.((........)).))))))))))))..........)))...))))))... ( -20.40)
>DroSim_CAF1 22725 118 - 1
AAUAAACUUUCAUUAC--GUGGUCAAUUUGACUUGGUUACUUGAAGUAACAAAAUAUCUUGUUUCAAGUUCAAUACCAAAUGCACCAAGUAACUAUAAACCAAUAUACUUUAAUGAAUAA
........(((((((.--((((((.....)))(((((.(((((((...((((......))))))))))).....)))))...))).(((((..(((......)))))))))))))))... ( -20.60)
>consensus
AAUAAACUUUCAUUAC__GUGGUCAAUUUGACUUGGUUACUUGAAGUAACAAAAUAUCUUGUUUCAAGUUCAAUACCAAAUGCACCAAGUAACUAUAAACCAAUAUACUUUAAUGAAUAA
........(((((((...((((((.....))).((((((((((..(((.(((......)))......((.....))....)))..))))))))))..........)))..)))))))... (-17.49 = -17.17 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:45 2006