Locus 2143

Sequence ID 2L_DroMel_CAF1
Location 5,783,598 – 5,783,697
Length 99
Max. P 0.901665
window3465

overview

Window 5

Location 5,783,598 – 5,783,697
Length 99
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 96.70
Mean single sequence MFE -29.60
Consensus MFE -28.95
Energy contribution -28.73
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.01
Structure conservation index 0.98
SVM decision value 1.02
SVM RNA-class probability 0.901665
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5783598 99 + 22407834
GGCCACAAGGAUGCAAGGUAGUGAACCAUCUCCACUGGACGGCUCACUUUUCGGGCUGUCAUUAAUGGCGCCGCUCAUUUGGCCUACAAACCAAAAAAA--
(((((....((.((..((.(((((.((.(((.....))).)).)))))..)).(((.((((....)))))))))))...)))))...............-- ( -29.80)
>DroSec_CAF1 20687 101 + 1
GGCCACAAGGAUGCAAGGUAGUGAACCAUCUCCACUGGACGGCUCACUUUUCGGGCUGUCAUUAAUGGCGCCGCUCAUUUGGCCUACAAACCAAAAAAAAA
(((((....((.((..((.(((((.((.(((.....))).)).)))))..)).(((.((((....)))))))))))...)))))................. ( -29.80)
>DroSim_CAF1 21462 100 + 1
GGCCACAAGGAUGCAAAGUAGUGAACCAUCUCCACUGGACAGCUCACUUUUCGGGCUGUCAUUAAUGGCGCCGCUCAUUUGGCCUACAAACCAAAAA-AAA
(((((...((.(((....(((((.........)))))((((((((.......)))))))).......))))).......))))).............-... ( -29.20)
>consensus
GGCCACAAGGAUGCAAGGUAGUGAACCAUCUCCACUGGACGGCUCACUUUUCGGGCUGUCAUUAAUGGCGCCGCUCAUUUGGCCUACAAACCAAAAAAAAA
(((((...((.(((....(((((.........)))))((((((((.......)))))))).......))))).......)))))................. (-28.95 = -28.73 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:44 2006