| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,782,770 – 5,782,868 |
| Length | 98 |
| Max. P | 0.646159 |
| Location | 5,782,770 – 5,782,868 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 65.01 |
| Mean single sequence MFE | -27.19 |
| Consensus MFE | -9.48 |
| Energy contribution | -9.23 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.61 |
| Structure conservation index | 0.35 |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.646159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5782770 98 + 22407834 ACUCUGACCACCACGCUGAGUACAUCAAAGUCAUGUUAA-GCAUAUGUAUGAGGCGUACUUGCCGUCGAAGAUACAUACA--------UGUCUCGGUGGAUGGUGGA .......(((((((((((((.((.........(((....-.)))(((((((.((((....))))(((...))).))))))--------))))))))))..)))))). ( -32.80) >DroSec_CAF1 19866 92 + 1 ACUCUGGCCACCACGCUGAGUACAUCAAAGUCAUGUUAA-GCAUAUAUGUA---CAUAUA---UGUCGAAGAUACAUACA--------UGUAUCGGUGGAAGGUGGA .......(((((.((((((.(((((....((.((.((..-((((((((...---.)))))---)))..)).))))....)--------))))))))))...))))). ( -28.30) >DroSim_CAF1 20645 88 + 1 ACUCUGGCCACCACGCUGAGUACAUCAAAGUCAUGUUAA-GCAUAUAUGU-------AUA---UGUCGAAGAUACAUACA--------UGUAUCGGUGGGAGGCGGA ..((((.(..(((((((....((((.......))))..)-))((((((((-------((.---((((...)))).)))))--------)))))..))))..).)))) ( -27.40) >DroWil_CAF1 36896 91 + 1 ------------CUGCCAAGUACAUCAAAAUCAUGUUAAAACACAUGGCAC---AGCACUUAAUGAUGAAAAUGAGAAUAAGGUAAAGUGAAGUGGUG-CCGGUAGA ------------(((((..((((.......((((((......))))))(((---..(((((........................)))))..))))))-).))))). ( -20.26) >consensus ACUCUGGCCACCACGCUGAGUACAUCAAAGUCAUGUUAA_GCAUAUAUGU____CGUACA___UGUCGAAGAUACAUACA________UGUAUCGGUGGAAGGUGGA .............((((.....((((......((((....))))..........................((((((............))))))))))...)))).. ( -9.48 = -9.23 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:43 2006