Locus 214

Sequence ID 2L_DroMel_CAF1
Location 620,681 – 620,801
Length 120
Max. P 0.962134
window330

overview

Window 0

Location 620,681 – 620,801
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 94.50
Mean single sequence MFE -45.40
Consensus MFE -38.60
Energy contribution -40.44
Covariance contribution 1.84
Combinations/Pair 1.02
Mean z-score -1.84
Structure conservation index 0.85
SVM decision value 1.54
SVM RNA-class probability 0.962134
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 620681 120 + 22407834
GGGCGUCGCCAGGUGGCCGCCCAUCCUACGGCAUUUGUCAGCGGCAUCGAACCAAUUCUGCCUGACAUGCCGCUCGAUGUAGAAAUACCUCGAACCCAACUUCUGGAAUUCCGGAUGUGG
(((((..(((....))))))))......(((((..(((((..((((..(((....))))))))))))))))).((((.(((....))).))))..(((...(((((....)))))..))) ( -48.30)
>DroSec_CAF1 9959 120 + 1
GGGCGUCGCCAGGUGACCGCCCAUCCUACGGCAUUUGUCAGCGGCAUCGAACCAAUUCUGCCUGACAUGCCGCUCGAUGUAGAAGUACCUCGAGCCCAACUUCUGGAAUUCCGGAUGGGG
(((((((((...)))).)))))......(((((..(((((..((((..(((....)))))))))))))))))(((((.(((....))).)))))((((...(((((....))))))))). ( -48.80)
>DroSim_CAF1 9156 120 + 1
GGGCGUCGCCAGGUGACCGCCCAUCCUACGGCAUUUGUCAGCGGCAUCGAACCAAUUCUGCCUGACAUGCCGCUCGAUGUAGAAGUACCUCGAGCCCAACUUCUGGAAUUCCGGAUGGGG
(((((((((...)))).)))))......(((((..(((((..((((..(((....)))))))))))))))))(((((.(((....))).)))))((((...(((((....))))))))). ( -48.80)
>DroEre_CAF1 13473 120 + 1
GGGCGUCGCCAGGUGACCGCCCAUCCUACGGCAUUUAUCCGCGGCAUCGAACCAAUUCUGCCUGACAUGCCUCUCGAUGUAAAAAUACCUCGAGCCCAACUUCUGGAAUUCCGGAGGGGG
(((((((((...)))).))))).......(((((...((...((((..(((....))))))).)).))))).(((((.(((....))).)))))(((..(((((((....)))))))))) ( -42.70)
>DroYak_CAF1 12445 120 + 1
GGGCGUCGCCAGGUGACCGCCCAUCCCACGACACUUUCCUGCGGCAUCGAACCAAUUCUGCCUGACAUGCCUCUCGAUGUAAAAAUACCUCGAGCCCAACUUCUGGAAUUCCGGAGGGGG
(((((((((...)))).)))))..(((...............((((..(((....)))))))..........(((((.(((....))).))))).....(((((((....)))))))))) ( -38.40)
>consensus
GGGCGUCGCCAGGUGACCGCCCAUCCUACGGCAUUUGUCAGCGGCAUCGAACCAAUUCUGCCUGACAUGCCGCUCGAUGUAGAAAUACCUCGAGCCCAACUUCUGGAAUUCCGGAUGGGG
(((((((((...)))).))))).......((((..(((((..((((..(((....)))))))))))))))).(((((.(((....))).)))))(((....(((((....))))).))). (-38.60 = -40.44 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:54 2006