Locus 2139

Sequence ID 2L_DroMel_CAF1
Location 5,780,866 – 5,780,961
Length 95
Max. P 0.729640
window3460

overview

Window 0

Location 5,780,866 – 5,780,961
Length 95
Sequences 3
Columns 95
Reading direction forward
Mean pairwise identity 96.49
Mean single sequence MFE -27.17
Consensus MFE -25.00
Energy contribution -25.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.93
Structure conservation index 0.92
SVM decision value 0.42
SVM RNA-class probability 0.729640
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5780866 95 + 22407834
GCUGUAUCCAGUUCCAUGGUCCACAUGGUGGCAUGUCCAAACAUAUGUGUGCCAUGUGCUGCUCUAAUCAAUGCGGCUUCCAUUUGCUUAAAAAA
(((((((.((((..(((((..((((((.(((.....)))....))))))..))))).)))).........))))))).................. ( -27.50)
>DroSec_CAF1 17926 95 + 1
UCUGUAUCCAGUUCCAUGGUCCACAUGGUGGCAUGUCCAAACAUAUGUGUGCCAUGUGCUGCUCUAAUCAAUGCGGCUUCCAUUUGCUUGAAAGU
......((.(((..(((((..((((((.(((.....)))....))))))..))))).(((((..........)))))........))).)).... ( -26.40)
>DroSim_CAF1 18717 95 + 1
UCUGUAUCCAGUUCCAUGGUCCACAUGGUGGCAUGUCCAAACAUAUGUGUGCCAUGUGCUGCUCUAAUCAAAGCGGCUUCCAUUUGCUUGAAAGU
......((.(((..(((((..((((((.(((.....)))....))))))..))))).((((((........))))))........))).)).... ( -27.60)
>consensus
UCUGUAUCCAGUUCCAUGGUCCACAUGGUGGCAUGUCCAAACAUAUGUGUGCCAUGUGCUGCUCUAAUCAAUGCGGCUUCCAUUUGCUUGAAAGU
...(((........(((((..((((((.(((.....)))....))))))..))))).(((((..........))))).......)))........ (-25.00 = -25.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:39 2006