| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,779,672 – 5,779,849 |
| Length | 177 |
| Max. P | 0.974329 |
| Location | 5,779,672 – 5,779,786 |
|---|---|
| Length | 114 |
| Sequences | 3 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 95.91 |
| Mean single sequence MFE | -29.47 |
| Consensus MFE | -27.15 |
| Energy contribution | -26.93 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.92 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.526124 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5779672 114 - 22407834 UCCGCUCCAUAGCGGAAUUAGCACCGAAAGAUGCGUAGUUGAGAUACUUUUCGAUUCCCACAGGAACUCUUACAUUUAUUAGUCGCCGGCGCAUUUAAUUUAAACGCGUCUGCU ((((((....))))))....(((.(....).)))((((((((((....))))))((((....))))...))))...........((.(((((.((((...)))).))))).)). ( -31.10) >DroSec_CAF1 16709 114 - 1 UCCGCCCCAUAGCGGAAUUAGCACCGAAAGAUGCGUAGCUGAGAUACUUUUCGAUUCCCACAGGAACUCUUACAUUUAUAAGUCGCCGGCGCAUUUAAUUUAAAAGCGUCUUUA (((((......)))))....(((.(....).)))(..(((((((....))))((((((....)))).))...........)))..).(((((.((((...)))).))))).... ( -28.20) >DroSim_CAF1 17528 114 - 1 UCCGCCCCAUAGCGGAAUUAGCACCGAAAGAUGCGUAGCUGAGAUACUUUUCGAUUCCCACAGGAACUCUUACAUUUAUUAGUCGCCGGCGCAUUUAAUUUAAAAGCGUCUUUA (((((......)))))....(((.(....).)))(..(((((((......))((((((....)))).)).........)))))..).(((((.((((...)))).))))).... ( -29.10) >consensus UCCGCCCCAUAGCGGAAUUAGCACCGAAAGAUGCGUAGCUGAGAUACUUUUCGAUUCCCACAGGAACUCUUACAUUUAUUAGUCGCCGGCGCAUUUAAUUUAAAAGCGUCUUUA (((((......)))))....(((.(....).)))((..((((((....))))((((((....)))).))...........))..)).(((((.((((...)))).))))).... (-27.15 = -26.93 + -0.22)
| Location | 5,779,746 – 5,779,849 |
|---|---|
| Length | 103 |
| Sequences | 3 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 96.12 |
| Mean single sequence MFE | -37.13 |
| Consensus MFE | -35.43 |
| Energy contribution | -36.10 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.69 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.974329 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5779746 103 - 22407834 GCGUAAAUCGCCUCUAUUAACAGGCGUUGUAAUUGCCGGUUGCAUGCAGGUGAUUAGCUGAAGUCCGCUCCAUAGCGGAAUUAGCACCGAAAGAUGCGUAGUU (((((((((((((.(((((((.((((.......)))).)))).))).)))))))).(((((..((((((....)))))).)))))..(....).))))).... ( -38.90) >DroSec_CAF1 16783 103 - 1 GCGUAAAUCGCCUCUAUUAACAGGCGUUGUAAUUGCCGGUUGCAUGCAGGUGAUUAGCUGUAGUCCGCCCCAUAGCGGAAUUAGCACCGAAAGAUGCGUAGCU (((((((((((((.(((((((.((((.......)))).)))).))).)))))))).((((...(((((......)))))..))))..(....).))))).... ( -37.90) >DroSim_CAF1 17602 100 - 1 GCGUAAAUCGCCUCUAUUAACAGGCGUUGUAAUUGCCGGUUGCAUG---GUGAUUAGCUGUAGUCCGCCCCAUAGCGGAAUUAGCACCGAAAGAUGCGUAGCU ((((((((((((.....((((.((((.......)))).))))...)---)))))).((((...(((((......)))))..))))..(....).))))).... ( -34.60) >consensus GCGUAAAUCGCCUCUAUUAACAGGCGUUGUAAUUGCCGGUUGCAUGCAGGUGAUUAGCUGUAGUCCGCCCCAUAGCGGAAUUAGCACCGAAAGAUGCGUAGCU (((((((((((((.(((((((.((((.......)))).)))).))).)))))))).((((...(((((......)))))..))))..(....).))))).... (-35.43 = -36.10 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:38 2006