Locus 2137

Sequence ID 2L_DroMel_CAF1
Location 5,779,151 – 5,779,243
Length 92
Max. P 0.616761
window3457

overview

Window 7

Location 5,779,151 – 5,779,243
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 98.55
Mean single sequence MFE -20.63
Consensus MFE -19.60
Energy contribution -19.93
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.95
SVM decision value 0.17
SVM RNA-class probability 0.616761
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5779151 92 + 22407834
CAAAUAUGAGAACCCACUCGCAUAGUUUAUAGCAAUAGAUCUUAGUGUGAAAUGCUGGCAAAUGUGAUAGAAUGCACAUUUAUGGGUUAUUA
..........((((((.(((((((((((((....))))).))..)))))).........(((((((........))))))).)))))).... ( -19.70)
>DroSec_CAF1 16212 92 + 1
CAAAUAUGAGAACCCACUCGCAUAGUUUAUCGCAAUAGAUCUUAGUGUGAAAUUCUGGCAAAUGUGAUAGAAUGCACAUUUAUGGGUUAUUA
..........((((((...((.(((..(.(((((.(((...))).))))).)..)))))(((((((........))))))).)))))).... ( -21.10)
>DroSim_CAF1 17006 92 + 1
CAAAUAUGAGAACCCACUCGCAUAGUUUAUCGCAAUAGAUCUUAGUGUGAAAUUCUGGCAAAUGUGAUAGAAUGCACAUUUAUGGGUUAUUA
..........((((((...((.(((..(.(((((.(((...))).))))).)..)))))(((((((........))))))).)))))).... ( -21.10)
>consensus
CAAAUAUGAGAACCCACUCGCAUAGUUUAUCGCAAUAGAUCUUAGUGUGAAAUUCUGGCAAAUGUGAUAGAAUGCACAUUUAUGGGUUAUUA
..........((((((...((.(((..(.(((((.(((...))).))))).)..)))))(((((((........))))))).)))))).... (-19.60 = -19.93 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:37 2006