Locus 2135

Sequence ID 2L_DroMel_CAF1
Location 5,778,022 – 5,778,140
Length 118
Max. P 0.589726
window3453

overview

Window 3

Location 5,778,022 – 5,778,140
Length 118
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 99.44
Mean single sequence MFE -35.33
Consensus MFE -35.07
Energy contribution -35.40
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.43
Structure conservation index 0.99
SVM decision value 0.11
SVM RNA-class probability 0.589726
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5778022 118 + 22407834
AGUCGCGGAAAGUGUAAGGACCCUAAAGCGCCUUAAAGCUGGCAACAAGCUACAACGGCGCUAAAAGCCGGCAACCAGGAUGCGGACACACUCGCAGACUUUUAUUUAUUUAUGCGGA
((((((((...((((..(.(.(((..((((((((..(((((....).))))..)).)))))).......(....).))).).)..))))..)))).)))).................. ( -34.00)
>DroSec_CAF1 15125 118 + 1
AGUCGCGGAAAGUGGAAGGACCCUAAAGCGCCUUAAAGCUGGCAACAAGCUACAACGGCGCUAAAAGCCGGCAACCAGGAUGCGGACACACUCGCAGACUUUUAUUUAUUUAUGCGGA
..(((((..(((((((((...(((..((((((((..(((((....).))))..)).)))))).......(....).))).(((((......)))))..))))))))).....))))). ( -36.00)
>DroSim_CAF1 15889 118 + 1
AGUCGCGGAAAGUGGAAGGACCCUAAAGCGCCUUAAAGCUGGCAACAAGCUACAACGGCGCUAAAAGCCGGCAACCAGGAUGCGGACACACUCGCAGACUUUUAUUUAUUUAUGCGGA
..(((((..(((((((((...(((..((((((((..(((((....).))))..)).)))))).......(....).))).(((((......)))))..))))))))).....))))). ( -36.00)
>consensus
AGUCGCGGAAAGUGGAAGGACCCUAAAGCGCCUUAAAGCUGGCAACAAGCUACAACGGCGCUAAAAGCCGGCAACCAGGAUGCGGACACACUCGCAGACUUUUAUUUAUUUAUGCGGA
..(((((..(((((((((...(((..((((((((..(((((....).))))..)).)))))).......(....).))).(((((......)))))..))))))))).....))))). (-35.07 = -35.40 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:33 2006