Locus 2129

Sequence ID 2L_DroMel_CAF1
Location 5,749,658 – 5,749,765
Length 107
Max. P 0.987298
window3440

overview

Window 0

Location 5,749,658 – 5,749,765
Length 107
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 83.55
Mean single sequence MFE -34.74
Consensus MFE -26.98
Energy contribution -27.54
Covariance contribution 0.56
Combinations/Pair 1.11
Mean z-score -2.66
Structure conservation index 0.78
SVM decision value 2.07
SVM RNA-class probability 0.987298
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5749658 107 - 22407834
UAAAGCACUGUCUUGAUGGAUUUGUCAGGGUCAGUUCCAAUUGGUGGUCACUUCAAGUGCCAGCUUAGGAUCGCUGGCAUCCUGGGAAACCAGAUUAUAUAUCUUUC
......(((((((((((......))))))).))))........((((((.......((((((((........))))))))..(((....)))))))))......... ( -34.10)
>DroSec_CAF1 25646 107 - 1
UAAAGCACUGUCUUGAUGGAUUUGUCAGGGUCAGUUCCAAUUGGUGGUCACUUCAAGUGCCAGCUUAGGAUCGCUGGCAUUCUGGGAAACCAGAUUGUAUAUAUUUC
...((((((((((((((......))))))).))))(((....(.(((.(((.....)))))).)...)))..))).(((.(((((....))))).)))......... ( -37.90)
>DroSim_CAF1 21398 107 - 1
UAAAGCACUGUCUUGAUGGAUUUGUCAGGGUCAGUUCCAAUUGGUGGUCACUUCAAGUGCCAGCUUAGGAUCGCUGGCAUUCUGUGAAACCAGAUUGUAUAUCUUUC
......(((((((((((......))))))).))))..((((((((..((((....(((((((((........)))))))))..)))).)))).)))).......... ( -36.10)
>DroEre_CAF1 22375 94 - 1
CAGAGCACUGUCUUGAUGGAUUUGUCAGGGUCAGUUCCGGUUUGUGG-CACUUGAAGUGCCAGUAGAGCAUAGCUCACAUUCGGGGAAACCAGCU------------
..(((((((((((((((......))))))).))))...(.(((((((-(((.....)))))).)))).)...)))).......((....))....------------ ( -35.00)
>DroYak_CAF1 22236 95 - 1
UAAAGCACUGUCUUGAUGGAUUUGUCAGGGUCAGUUCCGAUUUUCGGUCACUUGAAGUGCCACUAUAGGAUAGCUGGCAUUCUGGGAAACCAGCU------------
......(((((((((((......))))))).)))).(((.....)))........(((((((((((...)))).)))))))((((....))))..------------ ( -30.60)
>consensus
UAAAGCACUGUCUUGAUGGAUUUGUCAGGGUCAGUUCCAAUUGGUGGUCACUUCAAGUGCCAGCUUAGGAUCGCUGGCAUUCUGGGAAACCAGAUU_UAUAU_UUUC
......(((((((((((......))))))).)))).(((.....)))........(((((((((........)))))))))((((....)))).............. (-26.98 = -27.54 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:21 2006