Locus 2128

Sequence ID 2L_DroMel_CAF1
Location 5,747,795 – 5,747,903
Length 108
Max. P 0.970918
window3439

overview

Window 9

Location 5,747,795 – 5,747,903
Length 108
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 72.98
Mean single sequence MFE -20.74
Consensus MFE -14.46
Energy contribution -15.30
Covariance contribution 0.84
Combinations/Pair 1.06
Mean z-score -1.78
Structure conservation index 0.70
SVM decision value 1.67
SVM RNA-class probability 0.970918
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5747795 108 + 22407834
CA--UAAUAUAUAAACAAU-CCACUUCCACUUCCGCAAAUCUCUUUGCGGAAUGCAUUGGAUAGUGCAAAGGAAACUCGAAGGAUUUUGUUCAC-AA---AAUAAAAUUUGAUCU
..--...............-....((((..(((((((((....)))))))))(((((......)))))..))))..(((((..((((((....)-))---)))....)))))... ( -26.50)
>DroSec_CAF1 23659 91 + 1
CA--UAAUAUACAAACUGUGCCUCUUCCACUUCCGCAAAUCUCU-CGCGGAAUGCAUUGAAUAGUGCAAAGGAAAACCGAAGGAUUUUGUUUAC---------------------
..--........((((....((((((((..((((((........-.))))))(((((......)))))..))))....).))).....))))..--------------------- ( -19.70)
>DroSim_CAF1 19402 93 + 1
CAUAUAAUAUACAAACCGUGCCACUUCCACUUCCGCAAAUCUCA-UGCGGAAUGCAUUGGAUAGUGCAAAGGAAACUCGAAGGAUUUUGUUUAC---------------------
.......((.(((((((.(((.(((((((((((((((.......-))))))).)...)))).)))))).((....))....))..))))).)).--------------------- ( -22.30)
>DroEre_CAF1 20402 106 + 1
CA--UAAUAUACAAACCGAGCCACUCCCACUUCCGUCAAUCUUA-UGCGGAAUGCAUUGGAUAGUGCAAAGAUAACUUU------UUUGUUUCAAAAAUUAAUAAUAUUUGAUCC
..--.......((((((((((.........(((((.((......-))))))).)).))))...(.(((((((.....))------)))))..)..............)))).... ( -13.60)
>DroYak_CAF1 20165 111 + 1
CA--UAAUAAACAAACCCUGCCACUUCCACUUCCGCAAAUCGUA-UGCGGAAUGCAUUGGAUUGUGCAAAGGCAACUAUUAGAAUUUUGUUCC-AAACUUAAUAAUAUUUGAUCC
..--.......((((...((((........(((((((.......-)))))))(((((......)))))..))))..(((((....((((...)-))).....))))))))).... ( -21.60)
>consensus
CA__UAAUAUACAAACCGUGCCACUUCCACUUCCGCAAAUCUCA_UGCGGAAUGCAUUGGAUAGUGCAAAGGAAACUCGAAGGAUUUUGUUUAC_AA___AAUAA_AUUUGAUC_
........................((((..(((((((........)))))))(((((......)))))..))))......................................... (-14.46 = -15.30 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:20 2006