Locus 2121

Sequence ID 2L_DroMel_CAF1
Location 5,719,835 – 5,719,944
Length 109
Max. P 0.861724
window3423

overview

Window 3

Location 5,719,835 – 5,719,944
Length 109
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 79.21
Mean single sequence MFE -36.97
Consensus MFE -22.86
Energy contribution -24.03
Covariance contribution 1.17
Combinations/Pair 1.32
Mean z-score -2.00
Structure conservation index 0.62
SVM decision value 0.83
SVM RNA-class probability 0.861724
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5719835 109 - 22407834
UGCAAU---AGGAAAUAUGUCCGUCUGUGGCCAGUGCUCAUACUGUUCAAUGUGGCACUCCUGCUGGUUUGGAGGAACCUGCAGCAGGCCCAGAAACUGGCCGCAUCUUCUA
......---.(((......)))...((((((((((..((..((........))(((.((.((((.(((((....))))).)))).)))))..)).))))))))))....... ( -39.30)
>DroSec_CAF1 11544 106 - 1
UGCAAU---ACGAAAUAUGUCCGUCUGUGGCCAGUGCUCAUACUGCUCAGUGUGGCACUCCUGCUGGUUUGGAGGAACCUGCAGCAGGCUCAGAAACUGG---CAUCUUCCA
......---..(((..(((((..((((.(((((((((.((((((....))))))))))).((((.(((((....))))).))))..))))))))....))---))).))).. ( -39.60)
>DroSim_CAF1 13800 109 - 1
UGCAAU---AGGAAAUAUGUCCGUCUGUGGCCAGUGCUCAUACUGCUCAGUGUGGCACUUUUGCUGGUUUGGAGGAACCUGCAGCAGGCUCAGAAACUGGCCGCAUCUUCUA
......---.(((......)))...((((((((((((.((((((....)))))))).((.((((.(((((....))))).)))).))........))))))))))....... ( -40.30)
>DroEre_CAF1 12984 109 - 1
UGCAAU---AGAAGAUAUGUCCGUCUGUGGACAGUGCUCAUACUGCUCAGUGUGGCACUUCUGCUGGUUUGGAGGAACUUGCAGCAGGCUCGGAAACUUGCCGCAACUUCAA
......---.((((...((((((....))))))((((.((((((....))))))))))..((((.(((((....))))).))))..(((..(....)..)))....)))).. ( -39.40)
>DroYak_CAF1 11511 109 - 1
UGCAAU---AGAAGAUACAUCCGUCUGUGGCCAGUGCUCAUACUUCUCAGUGUGGCACUGCUGCUGGUUUGGAGGAACUUUCAGCAGGCUCAGAAACUUGCCGCAUCUUCAA
......---.((((((.((....((((.(((((((((.((((((....)))))))))))((((..(((((....)))))..)))).))))))))....))....)))))).. ( -39.90)
>DroAna_CAF1 11104 107 - 1
UGUAACUCCAAAGGAUUCCUCCGCCUGUUUCCAAUCGUUCUGCUCUUCAAUACCGCUUUGGUGCUCGUGUGGAGGAAUGUUCAGCAGGCCCAACAGCUCACCCAAAC-----
(((.........(((....)))(((((((......(((((..((((.((.((((.....))))....)).)))))))))...)))))))...)))............----- ( -23.30)
>consensus
UGCAAU___AGAAAAUAUGUCCGUCUGUGGCCAGUGCUCAUACUGCUCAGUGUGGCACUCCUGCUGGUUUGGAGGAACCUGCAGCAGGCUCAGAAACUGGCCGCAUCUUCAA
.......................((((.(((((((((.((((((....))))))))))).((((.(((((....))))).))))..)))))))).................. (-22.86 = -24.03 +   1.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:05 2006