Locus 212

Sequence ID 2L_DroMel_CAF1
Location 617,129 – 617,219
Length 90
Max. P 0.989353
window327

overview

Window 7

Location 617,129 – 617,219
Length 90
Sequences 5
Columns 90
Reading direction forward
Mean pairwise identity 98.67
Mean single sequence MFE -26.68
Consensus MFE -25.52
Energy contribution -25.56
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.87
Structure conservation index 0.96
SVM decision value 2.16
SVM RNA-class probability 0.989353
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 617129 90 + 22407834
GCUGCUGCAGUUGCAACUUGCAACCGCUGUUUUGUUGCAUUUGCGGCGCAGUCACACGCUCGGCUUAUCUGAUUAGGCUUCAAUUUCUCA
((.(((((((.((((((..(((.....)))...)))))).)))))))))............((((((......))))))........... ( -28.70)
>DroSec_CAF1 6391 90 + 1
GCUGCUGCAGUUGCAACUUGCAACCGCUGUUUUGUUGCAUUUGUGGCGCAGUCACACGCUCGGCUUAUCUGAUUAGGCUUCAAUUUCUCA
((.((..(((.((((((..(((.....)))...)))))).)))..))))............((((((......))))))........... ( -26.20)
>DroSim_CAF1 5560 90 + 1
GCUGCUGCAGUUGCAACUUGCAACCGCUGUUUUGUUGCAUUUGUGGCGCAGUCACACGCUCGGCUUAUCUGAUUAGGCUUCAAUUUCUCA
((.((..(((.((((((..(((.....)))...)))))).)))..))))............((((((......))))))........... ( -26.20)
>DroEre_CAF1 9772 90 + 1
GCUGCUGCAGUUGCAACUUGCAACCGCUAUUUUGUUGCAUUUGUGGCGCAGUCACACGCUCGGCUUAUCUGAUUAGGCUUCAAUUUCUCA
(..(((((.((..(((..((((((.........)))))).)))..)))))))..)......((((((......))))))........... ( -25.60)
>DroYak_CAF1 8742 89 + 1
GCUGCUGCAGUUGCAAC-UGCAACCGCUGUUUUGUUGCAUUUGUGGCGCAGUCACACGCUCGGCUUAUCUGAUUAGGCUUCAAUUUCUCA
(..(((((.((..(((.-((((((.........)))))).)))..)))))))..)......((((((......))))))........... ( -26.70)
>consensus
GCUGCUGCAGUUGCAACUUGCAACCGCUGUUUUGUUGCAUUUGUGGCGCAGUCACACGCUCGGCUUAUCUGAUUAGGCUUCAAUUUCUCA
((.(((((((.((((((..(((.....)))...)))))).)))))))))............((((((......))))))........... (-25.52 = -25.56 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:47 2006