Locus 2115

Sequence ID 2L_DroMel_CAF1
Location 5,699,639 – 5,699,739
Length 100
Max. P 0.608679
window3414

overview

Window 4

Location 5,699,639 – 5,699,739
Length 100
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 79.94
Mean single sequence MFE -30.10
Consensus MFE -18.39
Energy contribution -19.45
Covariance contribution 1.06
Combinations/Pair 1.24
Mean z-score -1.62
Structure conservation index 0.61
SVM decision value 0.15
SVM RNA-class probability 0.608679
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5699639 100 + 22407834
AAAUUGCACUUACGGCUAAACUGCCGUACCGCAAAUUGUGCGC---CUGUCCGACCCGGCGUAUGCGCAAUG--CAUUGGUCAUAUAUUAAGUAUUCGCUGUGGC---
..........((((((......))))))(((((....((((((---(.(......).)))))))(((.((((--(.(((((.....)))))))))))))))))).--- ( -32.60)
>DroGri_CAF1 188366 89 + 1
AAAUUGCACUUUG------UCUG---UGGCACAAAUAGUUUGCAGUCAGCUC------GCGUAUGUGCAAUG--UGC--AGCAUUUAUUAAGUAUACGCCAUGUGUUU
.....((((.(((------.(((---..(.((.....)))..))).)))...------((((((((((....--...--.)))).........))))))...)))).. ( -19.00)
>DroSec_CAF1 144996 100 + 1
AAAUUGCACUUACGGCUAAACUGCCGUACCGCAAAUUGUGCGC---CUGUCCGCCACGGCGUAUGCGCAAUG--CAUUGGCCAUAUAUUAAGUAUUCGCUGUGGC---
...((((...((((((......))))))..)))).........---......(((((((((.((((..((((--.((.....)).))))..)))).)))))))))--- ( -33.20)
>DroSim_CAF1 144492 100 + 1
AAAUUGCACUUACGGCUAAACUGCCGUACCGCAAAUUGUGCGC---CUGUCCGCCACGGCGUAUGCGCAAUG--CAUUGGCCAUAUAUUAAGUAUUCGCUGUGGC---
...((((...((((((......))))))..)))).........---......(((((((((.((((..((((--.((.....)).))))..)))).)))))))))--- ( -33.20)
>DroEre_CAF1 147799 100 + 1
AAAUUGCACUUACGGCUAAACUGCCGUACCGCAAAUUGUGCGC---CUGUCCAACGCGGCGUAUGCGCAAUG--CAUUGGUCAUAUAUUAAGUAUUCGCCGCGUG---
...((((...((((((......))))))..)))).........---.......((((((((.((((..((((--.((.....)).))))..)))).)))))))).--- ( -32.60)
>DroYak_CAF1 146796 102 + 1
AAAUUGCACUUACGGCUAAGCUGCCGUACCACAAAUUGUGAGC---CUGUCCACCGUGGCGUAUGCGCAAUGCGCAUUGGUCAUAUAUUACGUAUACGCUGUGUC---
.....((...((((((......)))))).(((.....))).))---........((..(((((((((.((((.((....))....)))).)))))))))..))..--- ( -30.00)
>consensus
AAAUUGCACUUACGGCUAAACUGCCGUACCGCAAAUUGUGCGC___CUGUCCGCCACGGCGUAUGCGCAAUG__CAUUGGUCAUAUAUUAAGUAUUCGCUGUGGC___
...((((...((((((......))))))..))))....................(((((((.((((..((((.............))))..)))).)))))))..... (-18.39 = -19.45 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:57 2006