Locus 2112

Sequence ID 2L_DroMel_CAF1
Location 5,692,939 – 5,693,029
Length 90
Max. P 0.704311
window3409

overview

Window 9

Location 5,692,939 – 5,693,029
Length 90
Sequences 6
Columns 112
Reading direction forward
Mean pairwise identity 78.72
Mean single sequence MFE -22.28
Consensus MFE -14.41
Energy contribution -14.88
Covariance contribution 0.47
Combinations/Pair 1.11
Mean z-score -1.49
Structure conservation index 0.65
SVM decision value 0.36
SVM RNA-class probability 0.704311
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5692939 90 + 22407834
--------------AAGACGGCGUGAGAGU-UCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAUCAGCGUCUGAUUUCAGUUAG------AUACUC-CUGAGCCCUU
--------------.((((((((((((...-.))))))).((((((......))))))..............)))))...(((((....------......-)))))..... ( -20.40)
>DroGri_CAF1 178770 93 + 1
---------CAGUCGAGCGGGUGUGAGCGGUCCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAACAACGUCUGAUUUCUGUUAG------AUCUGGGGUG-GC---U
---------((.((.((.(((((((((.....))))))).((((((......)))))).))............(((((((....)))))------)))).)).))-..---. ( -19.50)
>DroSim_CAF1 137652 90 + 1
--------------AAGACGGCGUGAGAGA-UCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAUCAGCGUCUGAUUUCAGUUAG------AUACUC-CUGAGCCCUU
--------------.((((((((((((...-.))))))).((((((......))))))..............)))))...(((((....------......-)))))..... ( -20.40)
>DroEre_CAF1 140838 90 + 1
--------------AAGACGGCGUGAGAGA-UCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAUCAGCGUCUGAUUUCAGUUAG------AUACUC-CUGAGCCCUU
--------------.((((((((((((...-.))))))).((((((......))))))..............)))))...(((((....------......-)))))..... ( -20.40)
>DroYak_CAF1 139762 96 + 1
--------------AAGACGGCGUGAGAGA-UCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAUCAGCGUCUGAUUUCAGUUAGGCCCAGUUACUC-CUGAGCCCUU
--------------.((((((((((((...-.))))))).((((((......))))))..............)))))...........(((.(((......-))).)))... ( -25.70)
>DroMoj_CAF1 277870 101 + 1
AAGGAGGCCCAGUUAGCUGGGUGUGAGCAGUGCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAACAACGUCUGAUUUCUGUAAG------AUCUCG-UUG-AC---U
..((..((((((....))))))((((((...))))))...((((((......)))))).))........(((((...(((((.....))------))).))-)))-..---. ( -27.30)
>consensus
______________AAGACGGCGUGAGAGA_UCUCAUGCAUAAUUAAACACGUAAUUAACCAUUAUUAUCAGCGUCUGAUUUCAGUUAG______AUACUC_CUGAGCCCUU
...............((((((((((((.....))))))).((((((......))))))..............)))))................................... (-14.41 = -14.88 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:51 2006