| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 616,469 – 616,561 |
| Length | 92 |
| Max. P | 0.998895 |
| Location | 616,469 – 616,561 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 92.17 |
| Mean single sequence MFE | -19.42 |
| Consensus MFE | -17.75 |
| Energy contribution | -18.15 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.91 |
| SVM decision value | 3.27 |
| SVM RNA-class probability | 0.998895 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 616469 92 + 22407834 ACUGUAAAAUGAACACUUGGUGACAAACGGCAAUAGCCAACGGCAAGCAAAAAGUUGUCAAAGAGUUUCAAAGUUCGUACAGAGAAAACGAU .((((...((((((((((..((((((...((....(((...)))..))......))))))..))))......)))))))))).......... ( -21.00) >DroSec_CAF1 5779 92 + 1 ACUGUAAAAUGAACACUUGGUGACAAACAGAAAUAGCCAACGGCAAGCAAAAAGUUGUCAAAGAGUUUCAAAGUUCGUACAGGGAAAAAGAU .((((...((((((((((..((((((.........(((...)))..........))))))..))))......)))))))))).......... ( -19.91) >DroSim_CAF1 4948 92 + 1 ACUGUAAAAUGAACACUUGGUGACAUACAGCAAUAGCCAACGGCAAGCAAAAAGUUGUCAAAGAGUUUCAAAGUUCGUACAGGGAAAACGAU .((((...((((((((((..((((...........(((...))).(((.....)))))))..))))......)))))))))).......... ( -18.70) >DroEre_CAF1 9134 92 + 1 ACUGUAAAAUGAACACUUGGUGACAAACAGCCAUAGCCAACGGCAACCAAAUUCUUGUCAAGGAGUUCCAAAGUUCGUACAGAGAAACAGAA .((((...((((((..(((....)))...(((.........))).....(((((((....))))))).....)))))))))).......... ( -19.60) >DroYak_CAF1 8125 92 + 1 ACUGUAAAAUGAACACUUGGUGACAAACAGCAAUAGCCAACGGCAACCAAAAUCUUGUCAAAGCGUUCCAAAGUUCGUACAGAGAAAAAGAU .((((...((((((..((((.(((.....((....))....(((((........))))).....))))))).)))))))))).......... ( -17.90) >consensus ACUGUAAAAUGAACACUUGGUGACAAACAGCAAUAGCCAACGGCAAGCAAAAAGUUGUCAAAGAGUUUCAAAGUUCGUACAGAGAAAAAGAU .((((...((((((((((..((((((.........(((...)))..........))))))..))))......)))))))))).......... (-17.75 = -18.15 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:45 2006