Locus 2108

Sequence ID 2L_DroMel_CAF1
Location 5,685,313 – 5,685,418
Length 105
Max. P 0.710351
window3400

overview

Window 0

Location 5,685,313 – 5,685,418
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 99.62
Mean single sequence MFE -24.11
Consensus MFE -23.48
Energy contribution -23.68
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.97
SVM decision value 0.37
SVM RNA-class probability 0.710351
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5685313 105 + 22407834
CGGGCCACAAGUUUAUUUGCUCAUUCAGCUCAAUCACAGAUCAAAUAGCUGGGAAAAGUGCUGGAGUGCAAAUACCUGGCAAACAAUUUGAACUACUCUCAACCU
.((((((......(((((((...((((((.(..((.(((.........))).))...).))))))..)))))))..)))).......((((.......)))))). ( -24.30)
>DroSec_CAF1 130681 105 + 1
CGGGCCACAAGUUUAUUUGCUCAUUCAGCUCAAUCACAGAUCAAAUAGCUGGGAAAAGUGCUGGAGUGCAAAUACCUGGCAAACAAUUUGAACUACUCUCAACCU
.((((((......(((((((...((((((.(..((.(((.........))).))...).))))))..)))))))..)))).......((((.......)))))). ( -24.30)
>DroSim_CAF1 130142 105 + 1
CGGGCCACAAGUUUAUUUGCUCAUUCAGCUCAAUCACAGAUCAAAUAGCUGGGAAAAGUGCUGGAGUGCAAAUACCUGGCAAACAAUUUGAACUACUCUCAACCU
.((((((......(((((((...((((((.(..((.(((.........))).))...).))))))..)))))))..)))).......((((.......)))))). ( -24.30)
>DroEre_CAF1 133442 105 + 1
CGGGCCACAAGUUUAUUUGCUCAUUCAGCUCAAUCACAGAUCAAAUAGCUGGGAAAAGUGCUGGAGUGCAAAUACCUGGCAAACAAUUUGAACUACUCUCAACCU
.((((((......(((((((...((((((.(..((.(((.........))).))...).))))))..)))))))..)))).......((((.......)))))). ( -24.30)
>DroYak_CAF1 132124 105 + 1
CGGGCCACAAGUUUAUUUGCUCAUUCAGCUCAAUCACAGAUCAAAUAGCUGGCAAAAGUGCUGGAGUGCAAAUACCUGGCAAACAAUUUGAACUACUCUCAACCU
.((((((......(((((((...((((((.......(((.........)))........))))))..)))))))..)))).......((((.......)))))). ( -23.36)
>consensus
CGGGCCACAAGUUUAUUUGCUCAUUCAGCUCAAUCACAGAUCAAAUAGCUGGGAAAAGUGCUGGAGUGCAAAUACCUGGCAAACAAUUUGAACUACUCUCAACCU
.((((((......(((((((...((((((.(..((.(((.........))).))...).))))))..)))))))..)))).......((((.......)))))). (-23.48 = -23.68 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:43 2006