Locus 2107

Sequence ID 2L_DroMel_CAF1
Location 5,683,919 – 5,684,009
Length 90
Max. P 0.779944
window3399

overview

Window 9

Location 5,683,919 – 5,684,009
Length 90
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 86.77
Mean single sequence MFE -29.82
Consensus MFE -22.62
Energy contribution -23.65
Covariance contribution 1.03
Combinations/Pair 1.03
Mean z-score -3.06
Structure conservation index 0.76
SVM decision value 0.55
SVM RNA-class probability 0.779944
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5683919 90 - 22407834
-------------AUACAAAUGGGACCC-AAGCUGUUUAUGUUUUUCGAACGUGUUUGGAUGUCGG-GGCAGUUACAUUUGCACGCAGCUUGUCCAUUUGUAAUC
-------------.((((((((((...(-(((((((...(((......(((.(((((.(....).)-)))))))......))).))))))))))))))))))... ( -30.20)
>DroGri_CAF1 157931 104 - 1
AAAAAAGAAAUGGCAACAAACAGUACCAAAAGCUGUUUAUGUGUUUGGAACGUGUUUGGCUGUCAU-GGCAUUUACCGUAACACGCAGCUUGUCCAUUUGUAACC
.....(.(((((((((((((((((.(((((.((.......)).))))).)).))))))(((((.((-((......)))).))).))...))).)))))).).... ( -28.60)
>DroSec_CAF1 129343 90 - 1
-------------AUACAAAUGGGACCC-AAGCUGUUUAUGUUUUUCGAACGUGUUUGGAUGUCGG-GGCAGUUACAUUUGCACGCAGCUUGUCCAUUUGUAAUC
-------------.((((((((((...(-(((((((...(((......(((.(((((.(....).)-)))))))......))).))))))))))))))))))... ( -30.20)
>DroSim_CAF1 128773 90 - 1
-------------AUACAAAUGGGACCC-AAGCUGUUUAUGUUUUUCGAACGUGUUUGGAUGUCGG-GGCAGUUACAUUUGCACGCAGGUUGUCCAUUUGUAAUC
-------------.((((((((((((((-(((((((((.........))))).))))))..)))(.-(((((......)))).).).......)))))))))... ( -27.20)
>DroEre_CAF1 132049 89 - 1
-------------AUACAAAUGGGACCC-AAGCUGUUUAUGUUUUUCGAACGUGUUUGGAUGUC--GAGCAGUUACAUUUGCACGCAGCUUGUCCAUUUGUAAUC
-------------.((((((((((...(-(((((((.........((((.(((......)))))--))((((......))))..))))))))))))))))))... ( -30.70)
>DroYak_CAF1 130679 91 - 1
-------------AUACAAAUGGGACCC-AAGCUGUUUAUGUUUUUCGAACGUGUUUGGAUGUUGGGAGCAGUUACAUUUGCACGCAGCUUGUCCAUUUGUAAUC
-------------.((((((((((...(-(((((((........(((.(((((......))))).)))((((......))))..))))))))))))))))))... ( -32.00)
>consensus
_____________AUACAAAUGGGACCC_AAGCUGUUUAUGUUUUUCGAACGUGUUUGGAUGUCGG_GGCAGUUACAUUUGCACGCAGCUUGUCCAUUUGUAAUC
..............((((((((((.....(((((((....((((...))))((((.((..(((.....)))....))...))))))))))).))))))))))... (-22.62 = -23.65 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:42 2006