| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,680,285 – 5,680,411 |
| Length | 126 |
| Max. P | 0.835522 |
| Location | 5,680,285 – 5,680,377 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 84.76 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -18.46 |
| Energy contribution | -18.86 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.832455 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5680285 92 + 22407834 CAAAGGACUAAAAGUCGCGUC-GACAGAAGUC------GCAGUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUAGAUUCAAUUAAUUAAAGGUGAUA ......(((...(((((((.(-(((....)))------)...))))))).((((((((..(((((.....)))))...))))))))......))).... ( -26.60) >DroSec_CAF1 125335 98 + 1 CAAAGGAGUAAAAGUCGCGUC-GGCAGAGGUCGAGACUGCAGUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUGGAUUCAAUUAAUUAAAGGUGAUA ............(((((((.(-.((((.........)))).)))))))).(((((((((.(((((.....))))).).))))))))............. ( -28.90) >DroSim_CAF1 125020 76 + 1 CAAAGGAGUAAAAGUCGCG-----------------------UGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUGGAUUCAAUUAAUUAAAGGUGAUA .....((((....(((((.-----------------------((((.((((......)))).)))).))))).....)))).................. ( -22.50) >DroEre_CAF1 128153 98 + 1 CAAAGGAGUGAAAGUCGCCUC-GAAAGAGGUCGAGACUGCAGUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUGGAUUCAAUUAAUUAAAGGUGAUU ....(.(.((..(((((((((-....)))))...)))).)).).).....(((((((((.(((((.....))))).).))))))))............. ( -32.00) >DroYak_CAF1 126636 99 + 1 GAAAGGAGUAAAAGUCGCGUCCAAAAGAGGUCGAGAAUGCAGUGAGAUUGUGAUUGGACGACCGCAGGCGGCGGUAGAUUCAAUUAAUUAAAGGUGAUA .............(((((((((((....((((.............))))....)))))).(((((.....)))))..................))))). ( -23.02) >consensus CAAAGGAGUAAAAGUCGCGUC_GAAAGAGGUCGAGA_UGCAGUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUGGAUUCAAUUAAUUAAAGGUGAUA ............(((((((.......................))))))).(((((((((.(((((.....))))).).))))))))............. (-18.46 = -18.86 + 0.40)
| Location | 5,680,304 – 5,680,411 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 73.23 |
| Mean single sequence MFE | -29.32 |
| Consensus MFE | -15.90 |
| Energy contribution | -16.58 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.835522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5680304 107 + 22407834 UC-GACAGAAGUC------GCAGUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUAGAUUCAAUUAAUUAAAGGUGAUAAUUGGGUAGCUAAUUGGAAACAAGAUUUUCACUU ..-......((((------((...)))))).((((((((..(((((.....)))))...)))))))).....((((((.((((..((..((....))..))..)))).)))))) ( -28.70) >DroPse_CAF1 159886 101 + 1 UC-GAAUGAGGUCGAAAGUA--G-GAGCUGCUAAUGGAAAGAGUU---------UGGGAGUCAAUUAAUUCCAUCUGCUAAUUGGUUUGCUAAUUGGCAGAGNNNNNNNNNNNN .(-((((....((.(.((((--(-...)))))..).))....)))---------))(((((......))))).((((((((((((....))))))))))))............. ( -26.90) >DroSec_CAF1 125354 113 + 1 UC-GGCAGAGGUCGAGACUGCAGUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUGGAUUCAAUUAAUUAAAGGUGAUAAUUGGUUAGCUAAUUGGAAACAAGAUUUUCACUU ((-(((....)))))(.((((..((((.((((......)))).)))).)))))((((((.(((((((((((.......)))))))))......(((....)))))..)))))). ( -31.10) >DroSim_CAF1 125039 91 + 1 -----------------------UGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUGGAUUCAAUUAAUUAAAGGUGAUAAUUGGUUAGCUAAUUGGAAACAAGAUUUUAACUU -----------------------..(((((((((((((((.(((((.....))))).).)))))))...........)))))))(((((....(((....)))....))))).. ( -23.70) >DroEre_CAF1 128172 113 + 1 UC-GAAAGAGGUCGAGACUGCAGUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUGGAUUCAAUUAAUUAAAGGUGAUUAUUGGGUAGCUAAUUGGCAACAAGAUUUUCACCU ((-....))(((((..((....)).))))).(((((((((.(((((.....))))).).)))))))).....((((((..(((..((.(((....))).))..)))..)))))) ( -37.40) >DroYak_CAF1 126655 114 + 1 UCCAAAAGAGGUCGAGAAUGCAGUGAGAUUGUGAUUGGACGACCGCAGGCGGCGGUAGAUUCAAUUAAUUAAAGGUGAUAAUUGGGCACCUAAUUGGCAACAAGAUUUUCACGU .((......))...........((((((...((((((((..(((((.....)))))...)))))))).....(((((.........)))))..(((....)))...)))))).. ( -28.10) >consensus UC_GAAAGAGGUCGAGA_UGCAGUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUGGAUUCAAUUAAUUAAAGGUGAUAAUUGGGUAGCUAAUUGGAAACAAGAUUUUCACUU ...............................(((((((((.(((((.....))))).).)))))))).......((..(((((((....)))))))...))............. (-15.90 = -16.58 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:41 2006