| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,664,307 – 5,664,401 |
| Length | 94 |
| Max. P | 0.742792 |
| Location | 5,664,307 – 5,664,401 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 71.21 |
| Mean single sequence MFE | -26.94 |
| Consensus MFE | -10.38 |
| Energy contribution | -11.03 |
| Covariance contribution | 0.66 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.39 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.742792 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5664307 94 + 22407834 UCCGAGUG-AACCAAAAGCUACCGAAAAGUAGGGACGAG---A---------GCAAAGGGCAACCGACUUGCGGUGG-------GCGGUGGCUCAGAAAACAAUUUAAUAACGA .....((.-.......((((((((.(..((((((.(...---.---------))...((....))..)))))..)..-------.))))))))......))............. ( -23.24) >DroVir_CAF1 169076 99 + 1 UGGAGCUGCGGUCGAAGGGUAUGCCAGAGUUGGGGCGGCCAGGGUGCUGAAUGAGUGUGGCAAG--------GUUAAGA-------GUGGCUGCACAAAACAAUUUAAUAACGA ((.(((..(..((....))..(((((.(.(((...((((......))))..))).).)))))..--------.......-------)..))).))................... ( -25.40) >DroSec_CAF1 109352 94 + 1 UCCGAGUG-AGCCAAAAGCUACCGAAAAGUAGGUACGAG---A---------GCAAAGGGCAACCGACUUGCGGUGG-------GCGGUGGCUCAGAAAACAAUUUAAUAACGA ......((-(((((...(((((((..((((.....(...---.---------)....((....)).)))).)))).)-------))..)))))))................... ( -28.40) >DroSim_CAF1 108998 94 + 1 UCCGAGUG-AGCCAAAAGCUACUGAAAAGUAGGGUCGAG---A---------GCAAAGGGCAACCGACUUGCGGUGG-------GCGGUGGCUCAGAAAACAAUUUAAUAACGA ......((-(((((....(((((....))))).(((.(.---.---------((((.((....))...))))..).)-------))..)))))))................... ( -31.40) >DroEre_CAF1 110545 77 + 1 ------------------CUACCGAAAAGUAGGGGCGAG---A---------GCAAAGGGCAACCGACUUGCGGUGG-------GCGGUGGCUCGGAAAACAAUUUAAUAACGA ------------------((((((.(..(((((.((...---.---------))...((....))..)))))..)..-------.))))))....................... ( -22.00) >DroYak_CAF1 110386 101 + 1 UCGGAGUG-AGCCAAAAGCUACCGAAAAGUAGGGGCGAG---A---------GCAAAGGGCAAGCGACUUGCGGUGGGCGGUGGGCGGUGGCUCAGAAAACAAUUUAAUAACGA ......((-(((((...(((((((.(..(((((..((..---.---------((.....))...)).)))))..)...)))).)))..)))))))................... ( -31.20) >consensus UCCGAGUG_AGCCAAAAGCUACCGAAAAGUAGGGGCGAG___A_________GCAAAGGGCAACCGACUUGCGGUGG_______GCGGUGGCUCAGAAAACAAUUUAAUAACGA .................(((((((............................((.....)).((((.....))))..........)))))))...................... (-10.38 = -11.03 + 0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:35 2006