| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,662,106 – 5,662,223 |
| Length | 117 |
| Max. P | 0.711041 |
| Location | 5,662,106 – 5,662,223 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 89.06 |
| Mean single sequence MFE | -33.16 |
| Consensus MFE | -26.60 |
| Energy contribution | -27.32 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711041 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5662106 117 - 22407834 CGAAAUGUCAUCGAAAAGAAGCCAGCUUACUUUGCUUAAUAGUAUUUAUUUGUGAAGCAAUUUUGUCAGCUGGUAGUUUUUGUAGAGGCCGUUUGGAAUGUCAGAUGGCUCUGAAGG (((.......)))(((((..(((((((.((.((((((.((((.......)))).))))))....)).)))))))..))))).(((((.((((((((....))))))))))))).... ( -36.00) >DroSec_CAF1 107096 117 - 1 CGAAAUGCCAUCGAAAAGAAGCCAGCUUACUUUGCCUAAUAGUAUUUAUUUGUGAAGCAAUUUUGUCAGCUGGUAGUUUUUGUAGAGGCCGUUUGGAAUGUCAGAUGGCUCUGAAGG .......((.((.(((((..(((((((.((.((((...((((.......))))...))))....)).)))))))..)))))..((((.((((((((....)))))))))))))).)) ( -33.60) >DroSim_CAF1 106755 117 - 1 CGAAAUGCCAUCGAAAAGAAGCCAGCUUACUUUGCCUAAUAGUAUUUAUUUGUGAAGCAAUUUUGUCAGCUGGUAGUUUUUGUCGAGGCCGUUUGGAAUGUCAGAUGGCUCUGAAGG .......((.((((.((((((((((((.((.((((...((((.......))))...))))....)).)))))))..))))).))))((((((((((....)))))))))).....)) ( -34.90) >DroEre_CAF1 108401 105 - 1 CGAAAU------------UAGCCAGCUUACUUUGCCUAAUAGCAUUUAUUUGUGAAGCAAUUUCGUCAGCUGGUAAUUUGUGUAGAGGCCGUUUGGAAUGCCAGAUGGCGCUGGAGG ..((((------------((.((((((.((.((((......(((......)))...))))....)).)))))))))))).(.(((..(((((((((....))))))))).))).).. ( -33.20) >DroYak_CAF1 108139 117 - 1 GGAAAUGCCAUCGGAAAGAAGCCAGCUUACUUUGCCUAAUAGUAUUUAUUUGCGAAGCACUUUUGUCGGCCGGUAAUUUGUGCAGAGGACGUUUGGAAUGUCAGAUGGCUCUGGAGG ......(((((((((((((((....))).)))).)).....(((......)))...((((..((..(....)..))...))))....(((((.....))))).))))))........ ( -28.10) >consensus CGAAAUGCCAUCGAAAAGAAGCCAGCUUACUUUGCCUAAUAGUAUUUAUUUGUGAAGCAAUUUUGUCAGCUGGUAGUUUUUGUAGAGGCCGUUUGGAAUGUCAGAUGGCUCUGAAGG ....................(((((((.((.((((...((((.......))))...))))....)).)))))))........(((((.((((((((....))))))))))))).... (-26.60 = -27.32 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:34 2006