Locus 2100

Sequence ID 2L_DroMel_CAF1
Location 5,659,226 – 5,659,322
Length 96
Max. P 0.552320
window3390

overview

Window 0

Location 5,659,226 – 5,659,322
Length 96
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 82.03
Mean single sequence MFE -24.56
Consensus MFE -18.65
Energy contribution -19.93
Covariance contribution 1.28
Combinations/Pair 1.09
Mean z-score -1.31
Structure conservation index 0.76
SVM decision value 0.04
SVM RNA-class probability 0.552320
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5659226 96 + 22407834
GGCCUGCCAAUGCUUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUUUACUUAAUGUAGGUCAGUAAUGUGCGCUUCGGUCUCUCU--UACCC
(((.((((((....((((....)))).))))))))).(((((........(((((.....))))).......)))))((....))......--..... ( -27.86)
>DroPse_CAF1 128741 98 + 1
GGACUGCCAAUACUUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUUUACUUAAUGUAGGUCAGUAAUGUUACACACACUCUCUCGCUCGCUC
((.(((((((....((((....)))).)))))))))(((.((((......))))......(..((..(((..((.....)).)))..))..)..))). ( -24.30)
>DroEre_CAF1 105576 96 + 1
GGCCUGCCAAUGCUUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUUUACUUAAUGUAGGUCAGUAAUGUGCGCUGUGGUCUCUCU--UACGC
(((.((((((....((((....)))).))))))))).(((((........(((((.....))))).......)))))((.((((......)--))))) ( -27.16)
>DroYak_CAF1 105336 96 + 1
GACCUGCCAAUGCUUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUUUACUUAAUGUAGGUCAGUAAUGUGCGCUGUGGUCUCUCU--UACAA
((((((((((....((((....)))).))))))..((((............((((.....))))((((....)).)))))).)))).....--..... ( -26.40)
>DroMoj_CAF1 200020 76 + 1
----UGCCAACGCAUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUCCACUUAAUGUAGGUCAGUGAUGUGUU-----------------CG-
----((((((...(((((....)))))))))))(((.((((.................)))).)))............-----------------..- ( -17.33)
>DroPer_CAF1 132284 98 + 1
GGACUGCCAAUACUUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUUUACUUAAUGUAGGUCAGUAAUGUUACACACACUCUCUCGCUCGCUC
((.(((((((....((((....)))).)))))))))(((.((((......))))......(..((..(((..((.....)).)))..))..)..))). ( -24.30)
>consensus
GGCCUGCCAAUGCUUUGGGGAACCAAUUUGGCAGCCGGCAUAAAUAAAUUUUUACUUAAUGUAGGUCAGUAAUGUGCGCUACGGUCUCUCU__UACGC
((.(((((((....((((....)))).))))))))).(((((........(((((.....))))).......)))))..................... (-18.65 = -19.93 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:33 2006