Locus 21

Sequence ID 2L_DroMel_CAF1
Location 83,600 – 83,714
Length 114
Max. P 0.525283
window33

overview

Window 3

Location 83,600 – 83,714
Length 114
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 82.11
Mean single sequence MFE -29.98
Consensus MFE -17.59
Energy contribution -17.93
Covariance contribution 0.34
Combinations/Pair 1.30
Mean z-score -1.99
Structure conservation index 0.59
SVM decision value -0.02
SVM RNA-class probability 0.525283
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 83600 114 - 22407834
AAACAGCCAUCCGCCAAAAAAACGUUGAAGGAAAGGACGCAAAAAGAAUCAACGUCAUCUUCCUUUUUAGAAGCUAGUCUUAGCGAUGAGGAUCUGAACAAGACGGGAUUGGCA
.....(((((((.((.......(...(((((((..((((.............))))...)))))))...)..((((....)))).....)).(((.....)))..))).)))). ( -27.22)
>DroSec_CAF1 56045 114 - 1
AAACAGCCAUCCGCCAAAAAAACGUUGAAGGAAAGGACGCAGAAAGAAUCAACAUCAUCUUCAUUUUUAGACGCUAGUCUUAGCGAUGAGGAUCUGAGCAAGACGGGAUUGGCA
.....((((((((.(........(((((....................))))).(((((((((((...((((....))))....))))))))..)))....).))))..)))). ( -26.85)
>DroSim_CAF1 58537 114 - 1
AAACAGCCAUCCGCCAAAAAAACGUUGAAGGAAAGGACGCAAAAAGAAUCAACAUCAUCUUCAUUUUUAGACGCUAGUCUUAGCGAUGAGGAUCUGAGCAAGACGGGAUUGGCA
.....((((((((.(........(((((....................))))).(((((((((((...((((....))))....))))))))..)))....).))))..)))). ( -26.85)
>DroEre_CAF1 63014 114 - 1
AAACAGCCAGCCGCCAAAAAAGCAUUGAAGGAAAGAACGCAAAAAGAAUCAACGCCAUCUUCAUUUCUAGACGCCAGUCUUAGCGAUGAGGAUCUGUGCAAGGCGGGAUUGGCA
.....((((((((((......((((.((.((........(.....)........)).((((((((.((((((....))).))).)))))))))).))))..)))))..))))). ( -34.79)
>DroYak_CAF1 56114 114 - 1
AAGCAGCCAUCCGCCAAAAAAACUUUGAAGGAAAGGACGCAAAAAGAAUCAGCGGCAUCUUCAUUCCUAGACGCCAGUCUUAGCGAUGACGAUCUAUGCAAGGCGGGACUGGCA
.....((((((((((.......((((......))))...............(((..(((.(((((.((((((....))).))).))))).)))...)))..))))))..)))). ( -34.50)
>DroPer_CAF1 76409 114 - 1
AAACCACAAAAUCCAAAAAAGACAUUGCACAAAAAAAUGGCGAAAGAAGCAAUCGCGGCAUCAUUGAUUGAUGCAAAUCUUAGCGAUGAGGACAUGUGCAAGGUUGGGUCGGGG
...((.....((((((........(((((((.....((.((..((((.((....)).((((((.....))))))...)))).)).)).......)))))))..))))))..)). ( -29.70)
>consensus
AAACAGCCAUCCGCCAAAAAAACGUUGAAGGAAAGGACGCAAAAAGAAUCAACGUCAUCUUCAUUUUUAGACGCUAGUCUUAGCGAUGAGGAUCUGAGCAAGACGGGAUUGGCA
.....((((..(.((........(((((....................)))))...(((((((((.((((((....))).))).)))))))))...........)))..)))). (-17.59 = -17.93 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:27 2006