Locus 2099

Sequence ID	2L_DroMel_CAF1
Location	5,658,733 – 5,658,824
Length	91
Max. P	0.837706

overview

Window 9

Location	5,658,733 – 5,658,824
Length	91
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	91.50
Mean single sequence MFE	-28.02
Consensus MFE	-20.28
Energy contribution	-20.16
Covariance contribution	-0.12
Combinations/Pair	1.15
Mean z-score	-2.57
Structure conservation index	0.72
SVM decision value	0.74
SVM RNA-class probability	0.837706
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5658733 91 - 22407834
GGGUCGACUUCGAUGCCCCAACAAUGGUUUCUUAUCCUGCCACA--GCACUGUUAACCAGCUAACAGAGCUCUGGCUCUGUUGCUCUCUAACG
((((((....))..))))(((((..((........)).((((.(--((.((((((......)))))).))).))))..))))).......... ( -26.80)
>DroSec_CAF1 103802 91 - 1
GGGCCGACGUUGUUGCCCCAACAAUGGUUUCUUGUCCUGCCACA--GCACUGUUAACGGGCUAACAGAGCUCUGCCUCUGUUGCUCUCUAACA
((((...((((((((...)))))))).......))))(((....--)))..((((..((((.(((((((......)))))))))))..)))). ( -28.00)
>DroSim_CAF1 103428 91 - 1
GGGCCGACUUUGUUGGCCCAACAAUGGUUUCUUAUCCUGCCACA--GCACUGUUAACGGGCUAACAGAGCUCUGCCUCUGUUGCUCUCUAACA
((((((((...)))))))).....((((..........))))..--.....((((..((((.(((((((......)))))))))))..)))). ( -33.30)
>DroEre_CAF1 105089 91 - 1
GCGCCGACUUUGUUGCCCUAACAAUGGUUUCUUAUCCUGCCACA--GCACUGUUAACCGGCUAACAGAGCUCGGGCUCUGUUGCUCUCUAACA
((((((((..(((((.........((((..........))))))--)))..))....)))).((((((((....))))))))))......... ( -25.50)
>DroYak_CAF1 104827 93 - 1
GGCCUGACUUUGUUGCCCCAACAAUGGUUUCUUAUCCUGCCACAGAGCACUGUUAACCAGCUAACAGAGCUCUGCCUCUGUUGCUCUUUAACA
.(((((...((((((...))))))((((..........))))))).))...(((((..(((.(((((((......))))))))))..))))). ( -26.50)
>consensus
GGGCCGACUUUGUUGCCCCAACAAUGGUUUCUUAUCCUGCCACA__GCACUGUUAACCGGCUAACAGAGCUCUGCCUCUGUUGCUCUCUAACA
(((.((((...)))).))).....((((..........))))........(((((...(((.(((((((......))))))))))...))))) (-20.28 = -20.16 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:32 2006