Locus 2098

Sequence ID 2L_DroMel_CAF1
Location 5,657,787 – 5,657,879
Length 92
Max. P 0.569079
window3388

overview

Window 8

Location 5,657,787 – 5,657,879
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 91.30
Mean single sequence MFE -16.67
Consensus MFE -12.53
Energy contribution -12.53
Covariance contribution 0.00
Combinations/Pair 1.17
Mean z-score -1.65
Structure conservation index 0.75
SVM decision value 0.07
SVM RNA-class probability 0.569079
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5657787 92 - 22407834
UCAAACAGAACGCAACGAAAUUAUGAAAUUUUGUUUGAAAAAAAAUGAAUUACUUUCGAAAGUGGUUGACAACAUAAAGCCGUGUCACAUUA
((((((((((..((.........))...)))))))))).....((((((((((((....))))))))((((.(........))))).)))). ( -16.40)
>DroSec_CAF1 102847 92 - 1
UCAAACAGAACGGAACGGAAUUAUGAAAUUUUGUUUGAAAAAAAAUGAAUUACUUUUGAAAGUGGUUGACAACAUAAAGCUGUGUCACAUUA
((((((((((..................)))))))))).....((((((((((((....))))))))((((.((......)))))).)))). ( -16.37)
>DroSim_CAF1 102473 92 - 1
UCAAACAGAACGGAACGGAAUUAUGAAAUUUUGUUUGAAAAAAAAUGAAUUACUUUUGAAAGUGGUUGACAACAUAAAGCCGUGUCACAUUA
...........(..((((..(((((........(((....)))..(.((((((((....)))))))).)...)))))..))))..)...... ( -15.50)
>DroEre_CAF1 104129 92 - 1
UCAAAGGGAAUGAAACAAUAUUAUGAAAUUUUGUGUGAAAAAAUAUGAAGUACUUUUGAAAGUGGUUGACGACAUAAAGCCGUGUCACAUUA
(((((((........((......))..((((..(((......)))..)))).)))))))...........(((((......)))))...... ( -14.40)
>DroYak_CAF1 103857 91 - 1
UCAAACAAAAUGAAAUGGUAUUAUGAAAUUUUGUUUGAAAAAA-AUUAACUACUUUUGAAAGUGGUUGACAACAUAAAGCCGUGUCACAUUA
..........(((.(((((.(((((........(((....)))-.((((((((((....))))))))))...))))).))))).)))..... ( -20.70)
>consensus
UCAAACAGAACGAAACGGAAUUAUGAAAUUUUGUUUGAAAAAAAAUGAAUUACUUUUGAAAGUGGUUGACAACAUAAAGCCGUGUCACAUUA
((((((((((..................)))))))))).........((((((((....))))))))((((.(........)))))...... (-12.53 = -12.53 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:31 2006