Locus 2097

Sequence ID 2L_DroMel_CAF1
Location 5,651,768 – 5,651,866
Length 98
Max. P 0.834930
window3387

overview

Window 7

Location 5,651,768 – 5,651,866
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 71.21
Mean single sequence MFE -36.65
Consensus MFE -15.59
Energy contribution -13.32
Covariance contribution -2.27
Combinations/Pair 1.59
Mean z-score -1.94
Structure conservation index 0.43
SVM decision value 0.73
SVM RNA-class probability 0.834930
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5651768 98 + 22407834
CGGCGGCGGUGGCAGUGGCAACAAUUAGCCGGGAGGAUAUUUCCGGCAUUUCUCGCUUCCGCUGCAGCUUCCCCGCCGCCCGUCUGCGCUGGCGACGC
.((((((((.((.(((.(((.......((((((((....)))))))).......((....))))).))).))))))))))((((.((....)))))). ( -48.50)
>DroVir_CAF1 149739 83 + 1
-------GGCGGCAGCGGCAACAAUUAGCCAUGAGCAUAUUUCCGGCAUUUUAUGUUUCCGCUGCAGUUUCAUUACG------CGGCGCCGGCGC--U
-------(((((((((((.((((....(((..(((.....))).)))......)))).))))))).((......)).------...)))).....--. ( -27.60)
>DroGri_CAF1 116694 83 + 1
-------GGCGGCAGCGGCAACAAUUAGCCAUGAGCAUAUUUCCGGCAUUUUAUGUUUCCGUUGCAGUUUCAUUACG------CGACGUCGUGGC--U
-------(((.(((((((.((((....(((..(((.....))).)))......)))).)))))))..........((------((....))))))--) ( -24.70)
>DroSec_CAF1 96794 98 + 1
CGGCAGCGGUGGCAGUGGCAACAAUUAGCCGGGAGGAUAUUUCCGGCAUUUCUCGCUUCCGCUGCAGCUUCCCCGCCGCCCGUUUGCGCUGGCGACGC
..(((((((.(((..((....))....((((((((....)))))))).......))).))))))).((.((.(((.(((......))).))).)).)) ( -44.30)
>DroSim_CAF1 96196 98 + 1
CGGCGGCGGUGGCAGUGGCAACAAUUAGCCGGGAAGAUAUUUCCGGCAUUUCUCGCUUCCGCUGCAGCUUCCCCGCCGCCCGUCUGCGCUUUCGACGC
.((((((((.((.(((.(((.......((((((((....)))))))).......((....))))).))).))))))))))((((.........)))). ( -46.00)
>DroWil_CAF1 137666 84 + 1
--G----GGUAAAAGUGGCAACAAUUAGCCAUGAGGAUAUUUCCGGCAUUUUAUGCUUCCGUUGUUGCUGCUGCU--------GUGUCAUUACGCGGC
--.----......((..((((((((.(((.(((.(((....)))..))).....)))...))))))))..))(((--------((((....))))))) ( -28.80)
>consensus
__G____GGUGGCAGUGGCAACAAUUAGCCAGGAGGAUAUUUCCGGCAUUUCACGCUUCCGCUGCAGCUUCCCCGCC______CUGCGCUGGCGACGC
.......(((((((((((........(((.((((((............))))))))).))))))).((......))..........))))........ (-15.59 = -13.32 +  -2.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:30 2006