Locus 2090

Sequence ID 2L_DroMel_CAF1
Location 5,624,768 – 5,624,871
Length 103
Max. P 0.653698
window3378

overview

Window 8

Location 5,624,768 – 5,624,871
Length 103
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 90.23
Mean single sequence MFE -21.05
Consensus MFE -15.63
Energy contribution -16.83
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.79
Structure conservation index 0.74
SVM decision value 0.25
SVM RNA-class probability 0.653698
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5624768 103 + 22407834
UUUUGUCAGCGAAAACAGCAGAAGUAACAUCC---AUCUCUGCCCAUAUUUGAUUACCAUGCAUAUUUGCAAUUAUCACUUUUGCUGAUGACAUUAUAUAAAUUUG
..(..(((((((((...(((((..(.......---)..))))).......((((.....((((....))))...)))).)))))))))..)............... ( -23.10)
>DroSec_CAF1 68816 105 + 1
UUUUGUCAGCGAAAACAGCAGAAGUAACGUCCAGCAUCUCUGCCCAUAUUUGAUUACCAUGCAUAU-UGCAAUUAUCACUUUUGCUGAUGACAUUAUAUAAAUUUG
..(..(((((((((...(((((.((........))...))))).......((((.....(((....-.)))...)))).)))))))))..)............... ( -21.50)
>DroSim_CAF1 70567 105 + 1
UUUUGUCAGCGAAAACAGCAGAAGUAAUGUCCAGCAUCUCUGCUUAUAUUUGAUUACCAUGCAUAU-UGCAAUUAUCACUUUUGCUGAUGACAUUAUAUAAAUUUG
..(..(((((((((..((((((....(((.....))).))))))......((((.....(((....-.)))...)))).)))))))))..)............... ( -23.60)
>DroEre_CAF1 71794 105 + 1
UUUUGUCAGCGAAAACAGCAAAAGGCAUGUCGAACAACUCUGCCCAUAUUUGAUUACCAUGCAUAU-UUCAAUUAUCACUUUUGCUGAUGACAUUAUAUAAAUUUG
...(((((.......((((((((((((((..((.(((............))).))..)))))(((.-......)))..))))))))).)))))............. ( -19.60)
>DroYak_CAF1 69951 105 + 1
UUGUGUCAGCGAAAACUGCAGAAGAAACGUCGCACAUCUCUGCACAUAUUUGAUUACCACGCAUAU-UUCAAUUAUCACUUUUGCAGAUGAAACUAUAUUAAUUUG
((((....))))...(((((((((....((.(((......)))))(((.((((.............-.)))).)))..)))))))))................... ( -17.44)
>consensus
UUUUGUCAGCGAAAACAGCAGAAGUAACGUCCAACAUCUCUGCCCAUAUUUGAUUACCAUGCAUAU_UGCAAUUAUCACUUUUGCUGAUGACAUUAUAUAAAUUUG
..((((((((((((...(((((................))))).......((((.....((((....))))...)))).))))))))))))............... (-15.63 = -16.83 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:20 2006