Locus 2088

Sequence ID 2L_DroMel_CAF1
Location 5,621,026 – 5,621,120
Length 94
Max. P 0.692534
window3375

overview

Window 5

Location 5,621,026 – 5,621,120
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 80.41
Mean single sequence MFE -24.84
Consensus MFE -15.84
Energy contribution -16.16
Covariance contribution 0.32
Combinations/Pair 1.09
Mean z-score -1.81
Structure conservation index 0.64
SVM decision value 0.33
SVM RNA-class probability 0.692534
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5621026 94 + 22407834
UGUCUCUUGAUUGUGUGGGCAGCUCUGGUCAUAAAUUUAAUAUGACACCUGCAGGACGCAGGAGUACACACCCCACCCCACACUCCCCACUCCC
............(((((((........((((((.......)))))).(((((.....)))))..............)))))))........... ( -26.10)
>DroSec_CAF1 65065 87 + 1
UGUCUCUUGAUUGUGUGGGCAGCUCUGGUCAUAAAUUUAAUAUGACACCUGCAGGACGCAGGAGUCCACGGCACACACC-------CCACCACC
...........(((((((((.......((((((.......)))))).(((((.....))))).)))))).)))......-------........ ( -24.90)
>DroSim_CAF1 66838 87 + 1
UGUCUCUUGAUUGUGUGGGCAGCUCUGGUCAUAAAUUUAAUAUGACACCUGCAGGACGCAGGAGUCCACAGCCCACACC-------CCACCACC
............((((((((.((....((((((.......))))))....)).((((......))))...)))))))).-------........ ( -31.60)
>DroYak_CAF1 65997 84 + 1
UGUCUCUUGAUUGUGUGGGCAGCUCUGGUCAUAAAUUUAAUAUGACACCUGCAGGACGCAGGACUCCACUCGGCACUCC-------CCC---CU
.......((.(((.(((((........((((((.......)))))).(((((.....)))))..))))).)))))....-------...---.. ( -21.40)
>DroAna_CAF1 66564 89 + 1
UGUCUGUUGAUUAUGUGGCCAGUUCUGGUCAUAAAUUUAAUAUGACACCUACAGGAUGCACCACCCGACCUA-----CCAUACUGCCCCCGGCC
((((((((((...((((((((....))))))))...)))))).))))((....)).................-----.......(((...))). ( -20.20)
>consensus
UGUCUCUUGAUUGUGUGGGCAGCUCUGGUCAUAAAUUUAAUAUGACACCUGCAGGACGCAGGAGUCCACACCCCACACC_______CCACCACC
...((((((.((.((((((((....))((((((.......)))))).)))))).))..)))))).............................. (-15.84 = -16.16 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:17 2006