Locus 2087

Sequence ID 2L_DroMel_CAF1
Location 5,613,134 – 5,613,236
Length 102
Max. P 0.652008
window3374

overview

Window 4

Location 5,613,134 – 5,613,236
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 79.74
Mean single sequence MFE -22.74
Consensus MFE -11.68
Energy contribution -13.16
Covariance contribution 1.48
Combinations/Pair 1.30
Mean z-score -2.00
Structure conservation index 0.51
SVM decision value 0.25
SVM RNA-class probability 0.652008
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5613134 102 - 22407834
AUCGCCGCAAGGCAUUCACAAAUAGAUAUUUUGCGAGCUAGUUAAAUAUGUCAUUAUUUGACAUUAAUAACUCCAUUGCCAUUCGGCGUUUGACGAUUUCCC
...(((....)))...........((....((((((((.(((((...((((((.....))))))...))))).....(((....)))))))).)))..)).. ( -27.00)
>DroSec_CAF1 56942 102 - 1
AUUGCCGCGAGGCAUUCACAAAUAGAUAUUUUGCGAGCUAGUUAAAUGUGUCAUUAUUCGACAUUAAUAACUUCAUUGCCAUCCGCCGUUUGACAAUUUCCC
..((((....))))....((((..(.......((((...(((((...(((((.......)))))...)))))...))))......)..)))).......... ( -24.02)
>DroSim_CAF1 58762 94 - 1
AUCGCCGCGAGGCAUUCAGAAAUAGAUAUU--------UAGUUAAAUGUGUCAUUAUUCGACAUUAAUAACUCCAUUGUCAUCCGCCGUUUGACGAUUUCCC
...(((....))).....(((((.((((..--------.(((((...(((((.......)))))...)))))....))))......((.....))))))).. ( -21.00)
>DroEre_CAF1 59432 86 - 1
UUUGCCGUGAGGCAUUUACAAAUUGAUAUU----------------UGUGUAAUUAUUCGAUAUUAUUAACUUCAUAGUCAUACGGCGAUUGACGCUUUCCC
.((((((((.(((...(((((((....)))----------------)))).........((...........))...))).))))))))............. ( -18.10)
>DroYak_CAF1 57551 102 - 1
AUUGCCGCGAGGCAUUCAAAAAUAGAUAUUUUGCUAGCUGGUUAAAUGUGUAGUUUUUCGAUAUUAAUAAAUCCAUCGUCAUUCGGCGAUUGAUGAUUUCCC
..((((....)))).(((((((((.((((((.(((....))).)))))).).)))))).)).........(((.((((((....)))))).)))........ ( -23.60)
>consensus
AUUGCCGCGAGGCAUUCACAAAUAGAUAUUUUGC_AGCUAGUUAAAUGUGUCAUUAUUCGACAUUAAUAACUCCAUUGUCAUCCGGCGUUUGACGAUUUCCC
...(((....)))..........................(((((...(((((.......)))))...)))))..(((((((.........)))))))..... (-11.68 = -13.16 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:16 2006