Locus 2083

Sequence ID 2L_DroMel_CAF1
Location 5,607,390 – 5,607,501
Length 111
Max. P 0.848301
window3368

overview

Window 8

Location 5,607,390 – 5,607,501
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 94.66
Mean single sequence MFE -40.40
Consensus MFE -33.36
Energy contribution -34.28
Covariance contribution 0.92
Combinations/Pair 1.03
Mean z-score -1.68
Structure conservation index 0.83
SVM decision value 0.78
SVM RNA-class probability 0.848301
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5607390 111 + 22407834
CGAAUAAAGUCCUGGGAAAUGGAAGUGGAAACUCCCACUUUUCCAGGGGCAGUGCAGUUGCCGGACAGGAAGCAGACUCGUUUGGCCGAGAAAGGGCUGAAUUGGGUGGCA
........((((((((((((((.(((....))).))).)))))))..(((((.....))))))))).....((..(((((((..(((.......)))..)).))))).)). ( -41.50)
>DroSec_CAF1 51263 110 + 1
CGAACG-AGUCCUGGGAAAUGGAAGUGGAAACCCCCGCUUUUCCAGGGGCACUGCAGUUCCCGGACAGGAAGCAGACUCGUUUGGCCGAGAAAGGGCUGAAUUGGGUGGCA
((((((-(((((((((((((((..((....))..))).)))))))))....((((..((((......)))))))))))))))))((((...((........))...)))). ( -42.30)
>DroSim_CAF1 53076 110 + 1
CGAACG-AGUCCUGGGAAAUGGAAGUGGAAACCCCCGCUUUUCCAGGGCCACUGCAGUUGCCGGACAGGAAGCAGACUCGUUUGGCCGAGAAAGGGCUGAAUUGGGUGGCA
......-...((((((((((((..((....))..))).)))))))))(((.((((.....((.....))..))))(((((((..(((.......)))..)).)))))))). ( -41.80)
>DroEre_CAF1 51565 110 + 1
CGAAUG-AGUCCUGGGAAAUGGAAGUGGAAAACCCCUCCUUUCCGGGGGCAGUGCAGUUGCCGGACAGGAAGCAGACUCGUUUGGCCGAGAAAGGGCUGAAUUGGGUGGCA
......-.(((((.(((((.(((.(.((....))).)))))))).)))))..(((.(((.((.....)).)))..(((((((..(((.......)))..)).))))).))) ( -39.30)
>DroYak_CAF1 51646 110 + 1
CGAAUG-AGUCCUGGGAAAUGGAAGUGGAAAGCCCCUCUUUUCCAUGGGCAGUGCAGUUGCCGGACAGGAAGCAGACUCGUUUGGCCGAGAAAGGGCUGAAUUGGGUGGCA
......-..(((((....(((((((.((......))...))))))).(((((.....)))))...))))).((..(((((((..(((.......)))..)).))))).)). ( -37.10)
>consensus
CGAAUG_AGUCCUGGGAAAUGGAAGUGGAAACCCCCGCUUUUCCAGGGGCAGUGCAGUUGCCGGACAGGAAGCAGACUCGUUUGGCCGAGAAAGGGCUGAAUUGGGUGGCA
........(((((.(((....(((((((......)))))))))).)))))..(((.(((.((.....)).)))..(((((((..(((.......)))..)).))))).))) (-33.36 = -34.28 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:10 2006