Locus 2082

Sequence ID 2L_DroMel_CAF1
Location 5,604,683 – 5,604,776
Length 93
Max. P 0.511222
window3367

overview

Window 7

Location 5,604,683 – 5,604,776
Length 93
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 71.60
Mean single sequence MFE -26.50
Consensus MFE -13.80
Energy contribution -13.38
Covariance contribution -0.41
Combinations/Pair 1.29
Mean z-score -1.46
Structure conservation index 0.52
SVM decision value -0.04
SVM RNA-class probability 0.511222
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5604683 93 - 22407834
UCCUAUCGUUGCGUGGCCAAGAAUUCCCUGGGCGACACGGACGGCACAAUUAAGCUGUAUCGUAAGUAGUU----CUCAGAACCCAUUAC--------GCUUAUA
..........((((.(((.((......)).))).))..(((((((........))))).))((((...(((----(...))))...))))--------))..... ( -21.20)
>DroVir_CAF1 72041 98 - 1
GCAUAUCGCUGUGUGGCCAAGAACUCACUGGGCGAUACAGAUGGCACCAUCAAGCUAUAUAGUGAGUAGAG----CUCAUAACUAAAUACACU---UUAGGCGUA
((((((.(((((((.(((.((......)).))).)))).((((....)))).))).)))).(((((.....----)))))..(((((.....)---))))))... ( -28.40)
>DroPse_CAF1 62940 90 - 1
GCCUAUAGAUGUGUGGCCAAGAACUCCCUUGGCGAUACGGAUGGUACCAUCAAGCUGUACAGUGAGUAUAA----CU---UACCCGUUGA--------UGGGAUA
(((.((...(((((.((((((......)))))).))))).))))).(((((((...(((.(((.......)----))---)))...))))--------))).... ( -29.80)
>DroGri_CAF1 57580 100 - 1
GCCUAUCGUUGUGUGGCCAAGAACUCACUGGGCGAUACAGAUGGAACCAUUAAGCUUUACAGUAAGUAGAG----CUCUGGACUGAGUAUCGUUGUUUAUG-ACA
..(((((..(((((.(((.((......)).))).))))))))))..(((...((((((((.....))))))----)).)))..........(((......)-)). ( -28.40)
>DroWil_CAF1 74365 97 - 1
GCUUAUCGUUGUGUGGCCAAGAAUUCAUUGGGCGAUACAGAUGGCACCAUUAAACUGUAUAGUAAGUAUAUAAGAUUGAGAAACGAUAAU--------AGCCACA
((((((((((((((.(((............))).)))).((((....))))....((((((.....)))))).........)))))))..--------))).... ( -20.40)
>DroPer_CAF1 62981 90 - 1
GCCUAUAGAUGUGUGGCCAAGAACUCCCUUGGCGAUACGGAUGGCACCAUCAAGCUGUACAGUGAGUAUAA----CU---AACCCGUUGA--------UGGGAUA
(((.((...(((((.((((((......)))))).))))).))))).((((((((.(((((.....))))).----))---.......)))--------))).... ( -30.81)
>consensus
GCCUAUCGUUGUGUGGCCAAGAACUCACUGGGCGAUACAGAUGGCACCAUCAAGCUGUACAGUAAGUAGAA____CUCAGAACCCAUUAA________AGGCAUA
.........(((((.(((.((......)).))).)))))((((....))))..(((........)))...................................... (-13.80 = -13.38 +  -0.41)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:09 2006