Locus 2081

Sequence ID 2L_DroMel_CAF1
Location 5,595,605 – 5,595,705
Length 100
Max. P 0.742320
window3366

overview

Window 6

Location 5,595,605 – 5,595,705
Length 100
Sequences 3
Columns 105
Reading direction reverse
Mean pairwise identity 77.12
Mean single sequence MFE -18.54
Consensus MFE -13.63
Energy contribution -13.97
Covariance contribution 0.34
Combinations/Pair 1.18
Mean z-score -1.44
Structure conservation index 0.73
SVM decision value 0.45
SVM RNA-class probability 0.742320
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5595605 100 - 22407834
AGAUAUAGAUAUGAAAAACAAGAGAUAAAGAGGUAAAUACUCUUGUCGAGAUUGCUGAUCAGCGCUACCUGGUGGCGGUUUCCAGACGCCUUAAAA-----CAAA
.....................(((...(((((.......)))))((((((((((((.(((((......))))))))))))))..)))..)))....-----.... ( -21.40)
>DroSec_CAF1 39540 98 - 1
AAAUAAAGAUAUAUAAAAAAAGG----AA---GAAAAUACUCUUGUCGAGAUUGCUCACUAGCGCUACCUGGUGGCAGUUUCCAGACCCUUAAAAGAAAAAAAAA
...................((((----((---((......))))(((((((((((.((((((......))))))))))))))..))))))).............. ( -23.40)
>DroSim_CAF1 41293 96 - 1
AGACAAAGAUAUGAAAAACAAAA----AAGAAAUAACUACUCUUGUCGAGAUUGCUCACUAGCGCUACCCGGUGGAAGUUUCCAGACCCUUAAAAU-----CAAA
.(((((.((..............----.............)))))))((((((..((((..(......)..)))).))))))..............-----.... ( -10.83)
>consensus
AGAUAAAGAUAUGAAAAACAAGA____AAGA_GUAAAUACUCUUGUCGAGAUUGCUCACUAGCGCUACCUGGUGGCAGUUUCCAGACCCUUAAAAA_____CAAA
............................................(((((((((((.((((((......))))))))))))))..))).................. (-13.63 = -13.97 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:08 2006