Locus 2078

Sequence ID 2L_DroMel_CAF1
Location 5,583,349 – 5,583,444
Length 95
Max. P 0.821321
window3363

overview

Window 3

Location 5,583,349 – 5,583,444
Length 95
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 74.04
Mean single sequence MFE -24.75
Consensus MFE -11.26
Energy contribution -12.33
Covariance contribution 1.06
Combinations/Pair 1.08
Mean z-score -2.39
Structure conservation index 0.46
SVM decision value 0.68
SVM RNA-class probability 0.821321
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5583349 95 - 22407834
--UACGCAAAAAAGCAUAUUAAAGUUAAA------------UUUGCU----GUAAAACCGGAAAUACCCUAUGAAAAGGGUAUGGAAGUCCGGAAGUUUGACUAAUAGUUCCA
--...((......)).......(((((((------------(((...----......(((((.(((((((......))))))).....))))))))))))))).......... ( -24.60)
>DroSec_CAF1 27378 95 - 1
--UACUCAAAGUAUCAUAUUAAAGUUAAA------------GUUGCU----GACUAACCGGAAAUACCCUGUGAAAAGGGUAUGGAAAUCCGGAAGUUUGACUAAUAGUUCCA
--...(((((.(..........(((((..------------.....)----))))..(((((.(((((((......))))))).....))))).).)))))............ ( -22.40)
>DroSim_CAF1 29038 95 - 1
--UACUCAAAGAAGCACAUUAAAGUUAAA------------GUUGCU----GUCUAACCGGAAAUACCCUGUGAAAAGGGUAUGGAAAUCCGGAAGUUUGACUUAUGGUUCCA
--........(.(((.(((..((((((((------------.((...----......(((((.(((((((......))))))).....))))))).)))))))))))))).). ( -24.50)
>DroYak_CAF1 27458 109 - 1
AUUGGGAAAAGCAGCCUAUUAGAGUCAUAUCUGGAACAUAAGUUGCUGGGUGUAUAAACGUAACUACCCUCUGAAAAGAGUGCGCACAUCCAGAAGUCU----AAUAGUUCCA
....((((.......((((((((.(....((((((.....((((((...((......))))))))...((((....))))........))))))).)))----))))))))). ( -27.51)
>consensus
__UACGCAAAGAAGCAUAUUAAAGUUAAA____________GUUGCU____GUAUAACCGGAAAUACCCUGUGAAAAGGGUAUGGAAAUCCGGAAGUUUGACUAAUAGUUCCA
.........................................................(((((.(((((((......))))))).....))))).................... (-11.26 = -12.33 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:05 2006