Locus 2076

Sequence ID 2L_DroMel_CAF1
Location 5,579,853 – 5,579,970
Length 117
Max. P 0.813037
window3358

overview

Window 8

Location 5,579,853 – 5,579,970
Length 117
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.49
Mean single sequence MFE -50.19
Consensus MFE -30.15
Energy contribution -30.35
Covariance contribution 0.20
Combinations/Pair 1.39
Mean z-score -1.98
Structure conservation index 0.60
SVM decision value 0.65
SVM RNA-class probability 0.813037
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5579853 117 + 22407834
UUCCGCCUGCGAGCGGCGGGCGGCCUUCUCCUCCUGGCGCCGCCGCUCGGCAUUCCGCUGCUCGAGGCGACGCUGUUCGAGCAGCCUAAGCUUGUGCAGCUCCCACUCCUGCAGGUG
...(((((((((((((((((((.((..........))))))(((....)))....))))))))..((.((.(((((.(((((.......))))).)))))))))......))))))) ( -60.90)
>DroPse_CAF1 31540 117 + 1
AUCCGCUUUCUUGAGGCGCAAAAGGUUCUCUUGAUGGAGCUUUUGAGCCUCCUUUUGCUGCUGCUGACGACGCUUCUCGGCCUGCUUGACUUUUUCCAUCUCCCACUCCUGCAGACG
....((......(((((.((((((.(((.......))).)))))).))))).....))....(((((.((....)))))))((((..((.................))..))))... ( -30.03)
>DroSec_CAF1 23941 117 + 1
UUCCGCCUGCGAGCGGCGGGCGGCCUUCUGCUCCUGGCGCCGCCGCUCGGCAUUCCGCUGCUCGAGGCGACGCUGUUCGAACAGCCUCAGCUUGUGCAGCUCCCACUCCUGCAGGUG
...((((((((((((((((.((.((..........)))))))))))))((......(((((.((((..((.(((((....))))).))..)))).))))).......)).))))))) ( -59.32)
>DroSim_CAF1 25582 117 + 1
UUCCGCCUGCGAGCGGCGGGCGGCCUGCUCCUCCUGGCGCCGCCGCUCGGCAUUCCGCUGCUCGAGGCGACGCUGUUCGAGCAGCCUCAACUUGUGCAACUCCCACUCCUGCAGGUG
...(((((((((((((((((((((..((.((....)).)).)))))))((....)))))))))(((((...(((.....))).)))))......................))))))) ( -57.80)
>DroEre_CAF1 23914 117 + 1
CUCCGCCUGCGACCGGCGAACGGCCUUCUCCUCCAGACGCCGCCGCUCGGCGUUUCGCUGCUCCUGGCGGCGCUGUUCCAGCUGCCUCAGCUUCUGCAUCUCCCACUCCUGCAGGUG
...(((((((((.(((((((((((..........((((((((.....)))))))).(((((.....))))))))))))..))))..)).((....)).............))))))) ( -46.90)
>DroYak_CAF1 23812 117 + 1
CUCCGCCUGCGUCCGGCGAGCGGCCUUCUCCGCCUGACGCCGCCGCUCGGCGUUGCGCUCCUCCAGACGUCGCUGUUCGAGGAGCCUCAUCUUCUGCAUCUCCCACUCCUGCAGGUG
...((((((((((.((((.(((((..((.......)).))))))))).))).....((((((((((......)))...))))))).........................))))))) ( -46.20)
>consensus
UUCCGCCUGCGAGCGGCGGGCGGCCUUCUCCUCCUGGCGCCGCCGCUCGGCAUUCCGCUGCUCCAGGCGACGCUGUUCGAGCAGCCUCAGCUUGUGCAUCUCCCACUCCUGCAGGUG
...(((((((....(.((((((((....((.....))....)))))))).).....(((((((...(((....)))..))))))).........................))))))) (-30.15 = -30.35 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:00 2006