Locus 2075

Sequence ID 2L_DroMel_CAF1
Location 5,579,214 – 5,579,327
Length 113
Max. P 0.612658
window3357

overview

Window 7

Location 5,579,214 – 5,579,327
Length 113
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 82.92
Mean single sequence MFE -28.85
Consensus MFE -17.56
Energy contribution -17.12
Covariance contribution -0.44
Combinations/Pair 1.32
Mean z-score -1.92
Structure conservation index 0.61
SVM decision value 0.16
SVM RNA-class probability 0.612658
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5579214 113 + 22407834
GAACACUUUGAGACUGAAUAUAGACAUAU-AUCGCCUAGACGGUCAAAUUGGAUAUAUAUGAUUUAUAGCAUUUGCUAAUGAUGAUG--AGCAUGUGUACCGUCGGGGGCAUGCAA
...............((.((((....)))-)))((((.(((((((......))((((((((.(((((..((((....))))...)))--)))))))))))))))..))))...... ( -26.50)
>DroSec_CAF1 23291 115 + 1
UAACACCUUGUGACUGAAUAUAGGCAUAUUAAUGCCUAGACGGUCAAAUAGGAUAUU-UUGAUUUAUAGCAUUUGCUAAUGAUUAUGGUAGCAUGUGUACCAUCGGGAGCAUGCAA
.....(((..((((((....(((((((....)))))))..))))))...))).(((.-.(((((..((((....))))..)))))..)))((((((...((....)).)))))).. ( -38.20)
>DroSim_CAF1 24908 115 + 1
UAACACCUUGUGACUGAAUAUAGACAUAUUAUUGCCUAGACGGUCAAAUUGGAUAUU-UUGAUUUAUAGCAUUUGCUAAUGAUGUUGAUAGCAUGUGUACCAUCGGAGGCAUGCAA
(((((((...((((((....(((.((......)).)))..))))))....)).....-........((((....))))....)))))...((((((.(.((...))).)))))).. ( -27.20)
>DroEre_CAF1 23272 109 + 1
UGACAACUUGUGGGUGAAUAUAGACAUA---UUGCCUAGACAAUUGAAAUGGAUGU--UUGAUGUAUAGCAUUUGUUAAUGAUGAUGA--GCAUGUGUUCUAUGGGGAACAUGCAA
...(((.((((((((.(((((....)))---))))))..))))))).((..(((((--(........))))))..))...........--((((((.(((....))).)))))).. ( -23.50)
>consensus
UAACACCUUGUGACUGAAUAUAGACAUAU_AUUGCCUAGACGGUCAAAUUGGAUAUU_UUGAUUUAUAGCAUUUGCUAAUGAUGAUGA_AGCAUGUGUACCAUCGGGAGCAUGCAA
.....((...((((((....(((.((......)).)))..))))))....))..............((((....))))............((((((...((...))..)))))).. (-17.56 = -17.12 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:59 2006