Locus 207

Sequence ID 2L_DroMel_CAF1
Location 610,334 – 610,493
Length 159
Max. P 0.826593
window310 window311

overview

Window 0

Location 610,334 – 610,453
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 94.43
Mean single sequence MFE -48.21
Consensus MFE -42.70
Energy contribution -42.71
Covariance contribution 0.01
Combinations/Pair 1.08
Mean z-score -1.86
Structure conservation index 0.89
SVM decision value 0.14
SVM RNA-class probability 0.601313
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 610334 119 + 22407834
CGGCAACAUUGACGUGUGUGGCAUGUGGGCAAAUUUGUUGUUGCCGC-UGGAGAUGUUGCUAGUCGCUGCGGUUGCAAUGCUGCCGUUGUCAUUGGCCGAGGAAACAAUGCGGCGGCGCU
.(((((((((..((...((((((....((((....))))..))))))-))..))))))))).((((((((((((((((((....))))))....))))..(....)...))))))))... ( -47.60)
>DroEre_CAF1 1371 119 + 1
CGGCAACAUUGACGUGUGUGGCAUGUGGGCAAAUUUGUUGUUGCUGC-UGGAGAUGCUGCUAGUUGCUGCGGCUGCAAUGUGGCCGUUGUCAUUGGCCGCGGAAACAAUGCGGCGGCGCU
.((((((....(((((.....))))).((((.((((.(.((....))-.).))))..)))).))))))((.((((((..(((((((.......)))))))(....)..)))))).))... ( -47.80)
>DroYak_CAF1 1380 120 + 1
CGGCAACAUUGACGUGUGUGGCAUGUGGGCAAAUUUGUUGUUGCUGCCUGAAGAUGCUGCUAGUUGCUGCGGUUGCAAUGUGGCCGUUGUCAUUGGCCGCGGCAACAAUGCGGCGGCGCU
.((((.((((.(((((.....)))))(((((.............)))))...)))).)))).((((((((.(((((...(((((((.......))))))).)))))...))))))))... ( -49.22)
>consensus
CGGCAACAUUGACGUGUGUGGCAUGUGGGCAAAUUUGUUGUUGCUGC_UGGAGAUGCUGCUAGUUGCUGCGGUUGCAAUGUGGCCGUUGUCAUUGGCCGCGGAAACAAUGCGGCGGCGCU
.((((.((((..((...((((((....((((....))))..)))))).))..)))).)))).(((((((((.......((((((((.......)))))))).......)))))))))... (-42.70 = -42.71 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 1

Location 610,374 – 610,493
Length 119
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 93.31
Mean single sequence MFE -46.50
Consensus MFE -40.33
Energy contribution -40.33
Covariance contribution 0.01
Combinations/Pair 1.09
Mean z-score -2.36
Structure conservation index 0.87
SVM decision value 0.70
SVM RNA-class probability 0.826593
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 610374 119 + 22407834
UUGCCGC-UGGAGAUGUUGCUAGUCGCUGCGGUUGCAAUGCUGCCGUUGUCAUUGGCCGAGGAAACAAUGCGGCGGCGCUGCAAUUUAAAUAAGUGCCCGGCAACAGAGAACAUUGAACA
....((.-((....((((((..(.((((..(((((((.((((((((....(((((.(....)...))))))))))))).)))))))......)))).)..)))))).....)).)).... ( -40.50)
>DroEre_CAF1 1411 119 + 1
UUGCUGC-UGGAGAUGCUGCUAGUUGCUGCGGCUGCAAUGUGGCCGUUGUCAUUGGCCGCGGAAACAAUGCGGCGGCGCUGCAAUUUAAAUAAGUGCCCGGCAACAGGGAACAUCGAACA
.......-....((((.(.((.(((((((..((((((..(((((((.......)))))))(....)..))))))((((((............))))))))))))).)).).))))..... ( -49.20)
>DroYak_CAF1 1420 120 + 1
UUGCUGCCUGAAGAUGCUGCUAGUUGCUGCGGUUGCAAUGUGGCCGUUGUCAUUGGCCGCGGCAACAAUGCGGCGGCGCUGCAAUUUAAAUAAGUGCCCGGCAACAGAGAACAUUGAACA
(((.((((.......(((((..((((((((((((((((((....))))))....))))))))))))...)))))((((((............)))))).)))).)))............. ( -49.80)
>consensus
UUGCUGC_UGGAGAUGCUGCUAGUUGCUGCGGUUGCAAUGUGGCCGUUGUCAUUGGCCGCGGAAACAAUGCGGCGGCGCUGCAAUUUAAAUAAGUGCCCGGCAACAGAGAACAUUGAACA
((((((.........(((((..(((.((((((((((((((....))))))....)))))))).)))...)))))((((((............))))))))))))................ (-40.33 = -40.33 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:21 2006