Locus 2068

Sequence ID 2L_DroMel_CAF1
Location 5,575,922 – 5,576,042
Length 120
Max. P 0.999710
window3341

overview

Window 1

Location 5,575,922 – 5,576,042
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.75
Mean single sequence MFE -31.50
Consensus MFE -30.54
Energy contribution -30.74
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -2.18
Structure conservation index 0.97
SVM decision value 3.93
SVM RNA-class probability 0.999710
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5575922 120 + 22407834
UGCACCCGGAAAAACUAACUCUCGAGGGCCUCAUCAAAGCCAAGCGCUCUCGGGGAUUACGCCUUUGGUUUGAAAACUUACCACAGACAAGAGGCAUAAAGCACAUUAUCCAGACACCAA
.......(((.....(((..(((((((((((...........)).)))))))))..))).((((((.(((((...........))))).)))))).............)))......... ( -31.90)
>DroSec_CAF1 19955 114 + 1
------CGGAAAAACUAACUCUCGAGGGCCUCAUCAAAGCCAAGCGCUCUCGGGGAUUACGCCUUUGGUUUGAAAACUUACCACAGACAAGAGGCAUAAAGCACAUUAUCCAGACACCAA
------.(((.....(((..(((((((((((...........)).)))))))))..))).((((((.(((((...........))))).)))))).............)))......... ( -31.90)
>DroSim_CAF1 21617 120 + 1
UGCACCCGGAAAAACUAACUCUCGAGGGCCUCAUCAAAGCCAAGCGCUCUCGGGGAUUACGCCUUUGGUUUGAAAACUUACCACAGACAAGAGGCAUAAAGCACAUUAUCCAGACACCAA
.......(((.....(((..(((((((((((...........)).)))))))))..))).((((((.(((((...........))))).)))))).............)))......... ( -31.90)
>DroEre_CAF1 19858 120 + 1
UAUAGCCAGAAGAACUAACUCUCGAGGGCCUCAUCAAAGCCAAGCGCUCUCGGGGAUUACGCCUUUGGUUUGAAAACUUACCACAGACAAGAGGCAUAAAGCACAUUAUCCAGACACCCA
....((.........(((..(((((((((((...........)).)))))))))..))).((((((.(((((...........))))).)))))).....)).................. ( -29.90)
>DroYak_CAF1 19748 120 + 1
UAUACCCGGAAAAACUAACUCUCGAGGGCCUCAUCAAAGCCAAGCGCUCUCGGGGAUUACGCCUUUGGUUUGAAAACUUACCACAGACAAGAGGCAUAAAGCACAUUAUCCAGAGACCAA
.......(((.....(((..(((((((((((...........)).)))))))))..))).((((((.(((((...........))))).)))))).............)))......... ( -31.90)
>consensus
UACACCCGGAAAAACUAACUCUCGAGGGCCUCAUCAAAGCCAAGCGCUCUCGGGGAUUACGCCUUUGGUUUGAAAACUUACCACAGACAAGAGGCAUAAAGCACAUUAUCCAGACACCAA
.......(((.....(((..(((((((((((...........)).)))))))))..))).((((((.(((((...........))))).)))))).............)))......... (-30.54 = -30.74 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:43 2006