Locus 2056

Sequence ID 2L_DroMel_CAF1
Location 5,560,626 – 5,560,716
Length 90
Max. P 0.872817
window3307

overview

Window 7

Location 5,560,626 – 5,560,716
Length 90
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 78.64
Mean single sequence MFE -19.27
Consensus MFE -13.84
Energy contribution -13.48
Covariance contribution -0.36
Combinations/Pair 1.17
Mean z-score -1.62
Structure conservation index 0.72
SVM decision value 0.88
SVM RNA-class probability 0.872817
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5560626 90 + 22407834
---------A--------CACAUCCUUUCGCACAUAGACCUUAUUCGCUUGCAGCACAUCCUAGCAUGGAAACAGCUCCACAAAGCUGGUAUCAAGAUGCAGGAAUU
---------.--------...........(((....((......))...)))......((((.((((.((..(((((......)))))...))...))))))))... ( -18.40)
>DroPse_CAF1 7129 107 + 1
CUUUUCCCAAUCAAUACCUAUCCCCUUCCUCCCUUAGACCUCAAUCGCCUGCAGCACAUCUUUGCCUGGAAACAGCUUCAUAAAACGGGUAUCAAAAUGCAGGAAUU
...............................................(((((((((......)))(((....)))......................)))))).... ( -16.30)
>DroSec_CAF1 5199 90 + 1
---------A--------CAUAUCCUUUCCCACAAAGACCUUAUUCGCCUGCAGCACAUCCUAGCAUGGAAGCAGCUCCACAAAGCCGGGAUCAAGAUGCAGGAAUU
---------.--------.............................((((((....((((..((.((((......))))....))..)))).....)))))).... ( -21.70)
>DroSim_CAF1 5174 90 + 1
---------A--------CAUAUCCUUUCCCACAAAGACCUUAUUCGCCUGCAGCACAUCCUAGCAUGGAAGCAGCUCCACAAAGCCGGGAUCAAGAUGCAGGAAUU
---------.--------.............................((((((....((((..((.((((......))))....))..)))).....)))))).... ( -21.70)
>DroYak_CAF1 5364 90 + 1
---------A--------CAUCUCCUUUCCCACAAAGACCUCAUUCGCCUGCAGCACAUCCUAGCAUGGAAACAGCUCCACAAAGCAGGGAUCAAGAUGCAGGAAUU
---------.--------.............................((((((....(((((.((.((((......))))....)).))))).....)))))).... ( -21.20)
>DroPer_CAF1 7122 107 + 1
CUUUUCCCAAUCAAUACCUACCCCCUUCCUCCCUUAGACCUCAAUCGCCUGCAGCACAUCUUUGCCUGGAAACAGCUUCAUAAAACGGGUAUCAAAAUGCAGGAAUU
...............................................(((((((((......)))(((....)))......................)))))).... ( -16.30)
>consensus
_________A________CAUAUCCUUUCCCACAAAGACCUCAUUCGCCUGCAGCACAUCCUAGCAUGGAAACAGCUCCACAAAGCCGGGAUCAAGAUGCAGGAAUU
...............................................((((((..........((.((....)))).((........))........)))))).... (-13.84 = -13.48 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:11 2006