Locus 2055

Sequence ID 2L_DroMel_CAF1
Location 5,554,570 – 5,554,690
Length 120
Max. P 0.642591
window3306

overview

Window 6

Location 5,554,570 – 5,554,690
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 91.83
Mean single sequence MFE -39.24
Consensus MFE -32.84
Energy contribution -33.00
Covariance contribution 0.16
Combinations/Pair 1.11
Mean z-score -1.35
Structure conservation index 0.84
SVM decision value 0.23
SVM RNA-class probability 0.642591
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5554570 120 + 22407834
GACUCGGAUAACUACAAGGUUAUUCCGGAUGCCGUCAAGGGUUUGUGCUUCGCGCACAAGGGCGAUGGUUCGAUGCUCAGCAUAGAGAAGUAUAUAACCGAAGAGCAUCCGUUGUGCAAA
.....((((((((....))))))))((((((((.((...((((((((((((.(((......))).....((.((((...)))).)))))))))).)))))).).)))))))......... ( -37.50)
>DroSec_CAF1 6707 120 + 1
GACUCGGAUAACUACAAGGUUAUUCCGGAUGCCGUCAAGGGUUUGUGCUUCGCGCACAAGGGCGAUGGUUCGAUGCUCAGCAUAGAGAAGUAUAUAACCGAAGAGCAUCCGUUGUGCAAA
.....((((((((....))))))))((((((((.((...((((((((((((.(((......))).....((.((((...)))).)))))))))).)))))).).)))))))......... ( -37.50)
>DroSim_CAF1 6827 120 + 1
GACUCGGAUAACUACAAGGUUAUUCCGGAUGCCGUCAAGGGGUUGUGCUUCGCGCACAAGGGCGAUGGUUCCAUGAUUAGCAUAGAGAAGUAUAUUACCGAAGAGCAUCCGUUGUGCAAA
.....((((((((....))))))))((((((((.....((...((((((((.(((......)))(((....)))............))))))))...))...).)))))))......... ( -35.60)
>DroEre_CAF1 6893 120 + 1
GACUCGGACAACUACAAGGUUGUGCCCGAUGCCCUCAAGGGCUUGUGCUUCUCGCACAAGGGCGAUGGCUCCAUGCUCAGCAUAGAGAAGUACAUAACCGAGGAGCAUCCGCUGUGCAAG
..(((((((((((....))))))((((...((((....))))((((((.....)))))))))).((..(((.((((...)))).)))..))......)))))..((((.....))))... ( -46.60)
>DroYak_CAF1 7006 120 + 1
GACUCGGACAACUACAAGGUCAUACCGGAUGCCGUCAAGGGUUUGUGCUUCUCGCACAAGGGCGAUGGCUCGAUGCUCUGCAUAGAGAAAUACAUUACCGAGGAGCAUCCGCUGUGCAAA
((((..(.......)..))))(((.((((((((.((.....(((((((.....)))))))((..(((.(((.((((...)))).))).....)))..)))).).))))))).)))..... ( -39.00)
>consensus
GACUCGGAUAACUACAAGGUUAUUCCGGAUGCCGUCAAGGGUUUGUGCUUCGCGCACAAGGGCGAUGGUUCGAUGCUCAGCAUAGAGAAGUAUAUAACCGAAGAGCAUCCGUUGUGCAAA
.....(.(((((.....((.....))(((((((.((.....(((((((.....)))))))((..(((.(((.((((...)))).))).....)))..)))).).))))))))))).)... (-32.84 = -33.00 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:10 2006