Locus 2052

Sequence ID 2L_DroMel_CAF1
Location 5,548,482 – 5,548,602
Length 120
Max. P 0.500000
window3300

overview

Window 0

Location 5,548,482 – 5,548,602
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.72
Mean single sequence MFE -47.58
Consensus MFE -28.31
Energy contribution -27.46
Covariance contribution -0.86
Combinations/Pair 1.44
Mean z-score -2.06
Structure conservation index 0.60
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5548482 120 + 22407834
UGCCCAAACAGGCUUUAACCGUGGGCGUUGGCACUGUGAUGGACUCCAAGGAGGUGAUGAUCCUCAUCACCGGAGCUCACAAGGCAUUUGCCCUGUACAAGGCCAUCGAGGAGGGUGUGA
.((((.....((((((...((.(((((...((..(((((..(.((((.....(((((((.....)))))))))))))))))..))...)))))))...)))))).((...)))))).... ( -44.90)
>DroVir_CAF1 662 120 + 1
UGCCCAAACAGGCGCUCACUGUGGGCGUCGGCACCGUCAUGGAUUCAAAUGAGGUCAUGAUCCUGAUUACCGGCGCCCACAAGGCCUUCGCUCUCUAUAAGGCCAUCGAGGAGGGCGUCA
..........(((((((..((((((((((((((..((((((..(((....)))..))))))..))....)))))))))))).((((((..........))))))........))))))). ( -54.30)
>DroGri_CAF1 673 120 + 1
UGCCCAAGCAGGCGCUCACUGUGGGCGUGGGUACCGUUAUGGACUCGCAUGAGGUGAUGAUCUUGAUUACGGGCGCCCACAAGUCCUUCGCCUUGUACAAGGCCAUUGAGGAGGGCGUCA
(((....)))(((((((..(((((((((((((.((.....)))))))).....(((((.......)))))....)))))))..(((((.(((((....)))))....)))))))))))). ( -50.10)
>DroWil_CAF1 610 120 + 1
UUCCUAAACAGGCUUUAACUGUGGGUGUGGGUACUGUGAUGGAUUCAAAGGAGGUUAUGAUACUCAUAACGGGCGGUCACAAGGCCUUCGCCUUGUACAAAGCGAUCGAAGAAGGUGUUA
......(((..(((((.((...(((((.((((..((((((.(.(((....)))((((((.....))))))...).))))))..)))).))))).))..))))).(((......)))))). ( -34.10)
>DroMoj_CAF1 682 120 + 1
UGCCCAAGCAGGCGUUGACUGUGGGCGUGGGCACGGUCAUGGACUCGAAAGAGGUGAUGAUCCUGAUAACGGGCGCCCACAAAGCAUUCGCCUUGUACAAGGCCAUCGAGGAGGGCGUCA
.((((..(((((((.((..(((((((((......((((((.(.(((....))).).))))))(((....))))))))))))...))..)))).)))......((.....)).)))).... ( -51.10)
>DroAna_CAF1 657 120 + 1
UGCCCAAGCAGGCGCUGACUGUGGGCGUGGGCACUGUGAUGGACUCCAAGGAAGUAAUGAUCCUAAUCACCGGUGCCCACAAGGCCUUCGCCCUCUACAAGGCCAUCGAGGAGGGGGUGA
.((((..((((.......))))))))((((((((((((((((...)).((((........)))).)))).)))))))))).......(((((((((....(.....)....))))))))) ( -51.00)
>consensus
UGCCCAAACAGGCGCUAACUGUGGGCGUGGGCACUGUGAUGGACUCAAAGGAGGUGAUGAUCCUGAUAACCGGCGCCCACAAGGCCUUCGCCCUGUACAAGGCCAUCGAGGAGGGCGUCA
.((((..((((.......))))))))((((((.((((((.((((((....))).......)))))))....)).))))))........((((((.................))))))... (-28.31 = -27.46 +  -0.86)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:04 2006