| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,547,960 – 5,548,059 |
| Length | 99 |
| Max. P | 0.603262 |
| Location | 5,547,960 – 5,548,059 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 78.10 |
| Mean single sequence MFE | -27.90 |
| Consensus MFE | -22.89 |
| Energy contribution | -22.37 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.90 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.603262 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5547960 99 + 22407834 A---CU--------AUUCUUUAGAUACUUCGUUUUGGGCCUGCCCACGGGAUCUACGCCAUUGGGAAUGUACAAAGAACUGAUCGAGUUUCAUAAGCAGGGCAAGGUAUC .---..--------........(((((((.((((((.((...((((..((.......))..))))...)).....(((((.....)))))......)))))).))))))) ( -21.30) >DroGri_CAF1 144 109 + 1 U-UUCUCAAUAUAUAUUUGCCAGAUAUUUUGUACUGGGUCUGCCCACGGGUAGCACACCAUUGGGUAUGUACAAGGAGCUGAUUGAGUUUCACAAGCAGGGCAAGGUCUC .-.............((((((.......((((((...(((((((....))))).))(((....)))..))))))((((((.....))))))........))))))..... ( -29.30) >DroEre_CAF1 143 99 + 1 A---CU--------GUUUUUCAGAUACUUUGUUUUGGGGCUGCCCACGGGAUCCACUCCAUUGGGGAUGUACAAAGAACUGAUCGAGUUCUACAAGCAGGGCAAGGUAUC .---..--------........(((((((((((((((..((.((((..(((.....)))..)))).).)..)..((((((.....)))))).....)))))))))))))) ( -31.60) >DroWil_CAF1 157 97 + 1 A---CU--------AU--UUCAGAUACUUUGUAUUGGGUUUACCCACAGGCUCCACGCCAUUGGGAAUGUAUCGAGAGUUAAUUGAAUUCUAUAAGCAGGGCAAGGUAUC .---..--------..--....((((((((((.....(((((((((..(((.....)))..)))).........((((((.....)))))).)))))...)))))))))) ( -28.10) >DroYak_CAF1 162 99 + 1 A---CU--------AUUUUUCAGAUACUUUGUUUUGGGCCUGCCCACGGGUUCCACUCCAUUGGGGAUGUACAAGGAGCUGAUCGAGUUUCACAAGCAGGGCAAGGUAUC .---..--------........((((((((((((((.((.(.((((..((.......))..)))).).))....((((((.....)))))).....)))))))))))))) ( -29.90) >DroAna_CAF1 147 102 + 1 ACAUGU--------AUAUUUCAGAUACUUCGUGCUGGGGCUGCCAACAGGAUCCACACCACUGGGUAUGUACAGGGAGCUCAUUGAGUUUUACAAACAGGGAAAGGUGUC ......--------........(((((((..(.((((((((.((.(((..(((((......))))).)))...)).))))).(((.......))).))).)..))))))) ( -27.20) >consensus A___CU________AUUUUUCAGAUACUUUGUUUUGGGCCUGCCCACGGGAUCCACACCAUUGGGAAUGUACAAAGAGCUGAUCGAGUUUCACAAGCAGGGCAAGGUAUC ......................(((((((((..(((......((((..((.......))..)))).........((((((.....)))))).....)))..))))))))) (-22.89 = -22.37 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:03 2006