Locus 2050

Sequence ID 2L_DroMel_CAF1
Location 5,546,462 – 5,546,555
Length 93
Max. P 0.894720
window3298

overview

Window 8

Location 5,546,462 – 5,546,555
Length 93
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 85.40
Mean single sequence MFE -24.10
Consensus MFE -23.07
Energy contribution -23.23
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.57
Structure conservation index 0.96
SVM decision value 0.98
SVM RNA-class probability 0.894720
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5546462 93 + 22407834
CGCAUUUUUUAUGGGUGGGCGUGGUCGCGUUUUACGCCGGCCAAACAAAUGCAACGCCCACACAGACUAUUAUACAAAAACUGAUGAAUACA------A
...........((.(((((((((((((((.....)).)))))...(....)..)))))))).))............................------. ( -23.90)
>DroSec_CAF1 8931 93 + 1
CGCAUUUUUUAUGGGUGGGCGUGGUCGCGUUUUACGCCGGCCAAACAAAUGCAACGCCCACACAGACUAUUAUACAAAAACUGAUGAAUACA------A
...........((.(((((((((((((((.....)).)))))...(....)..)))))))).))............................------. ( -23.90)
>DroSim_CAF1 11720 93 + 1
CGCAUUUUUUAUGGGUGGGCGUGGUCGCGUUUUACGCCGGCCAAACAAAUGCAACGCCCACACAGACUAUUAUACAAAAACUGAUGAAUACA------A
...........((.(((((((((((((((.....)).)))))...(....)..)))))))).))............................------. ( -23.90)
>DroEre_CAF1 9249 93 + 1
CGCAUUUUUUAUGGGUGGGCGUGGUCGCGUUUUACGACGGCCUAACUAAUUCAACGCCCACACAGACUAUUAUACACAAACUGAUGAAUACA------A
...........((.(((((((((((((((.....)).)))))...........)))))))).))............................------. ( -23.70)
>DroYak_CAF1 9421 80 + 1
CGCAUUUUUUAUGGGUGGGCGUGGUCGCGUUUUACGUCGGCCCAACAAAUUCAACGCCCACACAGACUAUUACA-------------AAACA------A
...........((.(((((((((((((((.....)).)))))...........)))))))).))..........-------------.....------. ( -23.70)
>DroAna_CAF1 8548 96 + 1
CGCAUUU-UUAUGAGUGGGCGUGGUCGCGUUAUACGCCGGCCAAACAAAUUCUACGCCCAC--AAACUAUUUUACACAAGAUGUUGAGAAGAAGGGAGA
(.(.(((-((....(((((((((((((((.....)).)))))...........))))))))--.(((.(((((....))))))))..))))).).)... ( -25.50)
>consensus
CGCAUUUUUUAUGGGUGGGCGUGGUCGCGUUUUACGCCGGCCAAACAAAUGCAACGCCCACACAGACUAUUAUACAAAAACUGAUGAAUACA______A
...........((.(((((((((((((((.....)).)))))...........)))))))).))................................... (-23.07 = -23.23 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:02 2006