Locus 2048

Sequence ID 2L_DroMel_CAF1
Location 5,536,527 – 5,536,639
Length 112
Max. P 0.920236
window3296

overview

Window 6

Location 5,536,527 – 5,536,639
Length 112
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 78.75
Mean single sequence MFE -30.55
Consensus MFE -21.31
Energy contribution -21.32
Covariance contribution 0.00
Combinations/Pair 1.30
Mean z-score -1.91
Structure conservation index 0.70
SVM decision value 1.13
SVM RNA-class probability 0.920236
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5536527 112 - 22407834
UGCAAGCGGUCGCAGUGCAUCAAGAACUACUGCGACUGCUAUCAGUCCAUGGCCAUCUGCACCAAGUUCUGUCGAUGCGUUGGUAUGAUUUCAUUUCUAUAAGCAUAAAUAU
(((.(((((((((((((..........)))))))))))))((((..(((..((((((.(((........))).)))).)))))..)))).............)))....... ( -34.90)
>DroSec_CAF1 10566 108 - 1
UGCAAGCGGUCGCAGUGCAUCAAGAACUACUGCGACUGCUACCAGUCCAUGGCCAUCUGCACCAAGUUCUGUCGAUGCACUGGUAGGAUUUCAUUUCUAUAAACA----UAU
....(((((((((((((..........)))))))))))))((((((.((((((...((......))....))).))).))))))((((......)))).......----... ( -34.80)
>DroEre_CAF1 10589 104 - 1
UGCAAGAGGUCGCAGUGCAUCAAGAACUACUGCGAUUGCUACCAGUCCAUGGCGAUCUGCACCAAGUUCUGUCGAUGCAUCGGUAAGAUUUCACUUCUA----CA----UAC
.....((((((((.(((((((.((((((..(((((((((((........)))))))).)))...))))))...)))))))..))..)))))).......----..----... ( -33.50)
>DroYak_CAF1 10574 104 - 1
UGCAAGAGGUCGCAGUGCAUCAAGAACUACUGCGAUUGCUAUCAAUCCAUGGCGAUCUGCACCAUGUUCUGUCGCUGCAUUGGUAAGAUUUCUCUUCUA----CA----UAU
....(((((((.(((((((.(.(((((...((((((((((((......))))))))).)))....)))))...).)))))))....)))))))......----..----... ( -32.90)
>DroMoj_CAF1 10556 97 - 1
UGCAAGCGCUCGCAAUGCAUCAAGAACUACUGCGAUUGCUAUCAGUCCAUGGCCAUUUGCUCCAUCUACUGCAAAUGCGUUGGUAAGCUC-------AA----UU----GGC
.((.((((.(((((................))))).))))......(((..(((((((((..........))))))).)))))...))..-------..----..----... ( -21.69)
>DroAna_CAF1 10307 105 - 1
UGCAAGCGGUCUCAGUGCAUCAAAAACUACUGCGACUGCUAUCAAUCCAUGGUGAUUUGCUCCAAGUUCUGCCGCUGUGUCGGUAAGUAUAUGUUUCAAA---AG----GAA
....(((((((.(((((..........))))).))))))).....(((.(((.(.....).))).....(((((......)))))...............---.)----)). ( -25.50)
>consensus
UGCAAGCGGUCGCAGUGCAUCAAGAACUACUGCGACUGCUAUCAGUCCAUGGCCAUCUGCACCAAGUUCUGUCGAUGCAUUGGUAAGAUUUCAUUUCUA____CA____UAU
.....((((((((((((..........))))))))))))(((((((.((((((.....((.....))...)))).)).)))))))........................... (-21.31 = -21.32 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:00 2006