| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,536,361 – 5,536,467 |
| Length | 106 |
| Max. P | 0.932033 |
| Location | 5,536,361 – 5,536,467 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 77.52 |
| Mean single sequence MFE | -46.51 |
| Consensus MFE | -27.31 |
| Energy contribution | -27.70 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.59 |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.932033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5536361 106 - 22407834 GGUGGACCCCAACUCCGUGGCCA---AGAAUUCC-AGCGCUGUGAAAAGGCAGAAGGCGGCUGCGAUGAGCGCCAAGGCAGCAGCCGCAGCUGCCAAGGCGGGCAUCGAU ((((..((((.....((..(((.---.(....).-.).))..))....(((((...(((((((((.....)((....)).))))))))..)))))..)).)).))))... ( -43.90) >DroVir_CAF1 11949 103 - 1 UGUGG-------CGACGCCGCCAAAGAAAACGGCGCUCGCCGCCAAGCGUGAACGCGCCGCUGCGCUGAGUGCCAAGGCAGCGGCUGCAGCGGCCAAGGCUGGCAUCAAU ...((-------((((((((..........))))).)))))((((.(((....)))((((((((((((..(((....))).)))).))))))))......))))...... ( -57.70) >DroSec_CAF1 10397 106 - 1 GGUGGACCCCAACUCGGUGGCCA---AGAAUUCC-AACGCUGUGAAAAGGCAGAAAGCGGCUGCGAUGAGCGCCAAGGCAGCAGCCGCAGCUGCCAAGGCGGGCAUCGAU ((((..((((..(.(((((....---........-..))))).)....(((((...(((((((((.....)((....)).))))))))..)))))..)).)).))))... ( -43.54) >DroEre_CAF1 10416 106 - 1 GGUGGACUCCAACUCCGGCGCCA---AGAACUCC-ACUGCCGUGAAGAGGCAGAAGGCGGCUGCGAUGAGCGCAAAGGCAGCAGCUGCAGCCGCCAAGGCGGGCAUCGAU ((((....((......))((((.---........-.(((((.......)))))..((((((((((.((...((....))..))..))))))))))..))))..))))... ( -44.90) >DroYak_CAF1 10400 106 - 1 GGUGGACUCCAACUCCGGCGCCA---AGAACUCC-AGCGCCGUGAAGAGGCAAAAGGCGGCUGCGAUGAGCGCAAAGGCCGCGGCUGCAGCUGCUAAGGCGGGCAUCGGU ((((..(.((...((((((((..---........-.)))))).))...((((....(((((((((....((......)))))))))))...))))..)).)..))))... ( -41.20) >DroAna_CAF1 10142 106 - 1 CGUGGACUCCAGCACACCAGCCA---AAAACUCG-AGUGCCGCCAAGCGAGAGAAGGCGGCUGCCAUGAGCGCCAAGGCUGCUGCUGCAGCGGCUAAGGCUGGCAUCCAU .(((((..(((((.....((((.---....((((-.((((((((...(....)..)))))).))..)))).......(((((....)))))))))...)))))..))))) ( -47.80) >consensus GGUGGACUCCAACUCCGCCGCCA___AGAACUCC_AGCGCCGUGAAGAGGCAGAAGGCGGCUGCGAUGAGCGCCAAGGCAGCAGCUGCAGCUGCCAAGGCGGGCAUCGAU ...................(((................(((.......)))....((((((((((....((((....)).))...))))))))))..))).......... (-27.31 = -27.70 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:59 2006