| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,517,269 – 5,517,371 |
| Length | 102 |
| Max. P | 0.989368 |
| Location | 5,517,269 – 5,517,371 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.70 |
| Mean single sequence MFE | -28.45 |
| Consensus MFE | -19.00 |
| Energy contribution | -18.23 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.67 |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.989368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5517269 102 + 22407834 AGCGGGAAUGGAGUUGGAGUCUACUCGCAACUGGAAGAAGUUCAAGUUGAGGAUGUGCC---AGUUGCUAAUAAAGCGAUUUAAGAGGU--UUCAUUCAUUCA-------------AAAA .....(((((((..((((..((.((.((((((((.....((((.......))))...))---))))))...((((....))))))))..--))))))))))).-------------.... ( -27.10) >DroSim_CAF1 147702 114 + 1 AA-GGGAAUGAAGCUUAAAUCUUCUCGCAACUGGAAGAAGUUCAAGUUGAGGAUGUGCC---AGUUGCUAAUAAAGCGAUUUAAGAGGU--UUCAUUCAUUCACUUACGUAGGAGACAAA ..-..((((((((((((((((.....((((((((.....((((.......))))...))---)))))).........))))))...)))--))))))).............(....)... ( -30.04) >DroYak_CAF1 146488 106 + 1 GACGGGAAUGGAGUUGGAGUCUCGUCUCAGCUGUGAGAAG------UGGAGGAUGGGCCGGUAGUUGCUAAUAAAGCGAUUUGGGAGGCGAUUCAUUCAUGC--------AGGUAAAAAA .((..(.(((((....((((((((((((.(((......))------).)).)))))(((...(((((((.....))))))).....)))))))).))))).)--------..))...... ( -28.20) >consensus AACGGGAAUGGAGUUGGAGUCUACUCGCAACUGGAAGAAGUUCAAGUUGAGGAUGUGCC___AGUUGCUAAUAAAGCGAUUUAAGAGGU__UUCAUUCAUUCA_______AGG__AAAAA .....(((((((.......(((((.(......))))))..................(((...(((((((.....))))))).....)))..)))))))...................... (-19.00 = -18.23 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:54 2006