Locus 204

Sequence ID 2L_DroMel_CAF1
Location 607,459 – 607,567
Length 108
Max. P 0.958151
window306

overview

Window 6

Location 607,459 – 607,567
Length 108
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 96.37
Mean single sequence MFE -31.56
Consensus MFE -30.14
Energy contribution -30.54
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.46
Structure conservation index 0.96
SVM decision value 1.49
SVM RNA-class probability 0.958151
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 607459 108 - 22407834
CUCUGCGGUUGGUUUCGGUUUCAGCCA----ACCACUCACUCGGUCUAGCCUUUGACUU-GGCCAUAAUACUCCCUGGUAUAAUGCCGCGGAUUGCCAAUGCCGCGCCUCUAA
....((((((((((..(((....))))----)))).......(((...(((........-)))........(((.((((.....)))).)))..)))...)))))........ ( -28.70)
>DroSec_CAF1 38891 108 - 1
CUCUGCGGUUGGUUUCGGUUUCAGCCA----ACCACUCACUCGGUCUAGCCUUUGACUU-UGCCAUAAUACUCCCUGGUAUUAUGCCUCGGAUUGCCAAUGCCGCGCCUCUAA
....(((((((((...(((....))).----.((........((((........)))).-.(.(((((((((....))))))))).)..))...))))..)))))........ ( -28.00)
>DroSim_CAF1 37287 108 - 1
CUCUGCGGUUGGUUUCGGUUUCAGCCA----ACCACUCACUCGGUCUAGCCUUUGACUU-GGCCAUAAUACUCCCUGGUAUUAUGCCGCGGAUUGCCAAUGCCGCGCCUCUAA
....(((((((((.((((((......)----))).....(.(((....(((........-)))(((((((((....)))))))))))).)))..))))..)))))........ ( -32.30)
>DroEre_CAF1 39381 113 - 1
CUCUGCGGUUGGUUUCGGUUUCAGCCAACCAACCACUCACUCGGUCUAGCCUUUGACUUUGGCCAUAAUACUGCCUGGUAUUAUGCCGCGGAUUGCCAAUGCCGCGCCUCUAA
....((((((((((..(((....)))))))))))........((((........))))..(((.((((((((....)))))))))))((((..........))))))...... ( -35.90)
>DroYak_CAF1 39353 109 - 1
CUCUGCGGUUGGUUUCGGUUUCAGCCA----ACCACUCACUCGGUCUAGCCUUUGACUUUGGCCAUAAUACUGCCUGGUAUUAUGCCGCGGAUUGCCAAUGCCGCGCCUCUAA
....((((((((((........)))))----)))........((((........))))..(((.((((((((....)))))))))))((((..........))))))...... ( -32.90)
>consensus
CUCUGCGGUUGGUUUCGGUUUCAGCCA____ACCACUCACUCGGUCUAGCCUUUGACUU_GGCCAUAAUACUCCCUGGUAUUAUGCCGCGGAUUGCCAAUGCCGCGCCUCUAA
....(((((((((...(((....)))......((........((((........))))..(((.((((((((....)))))))))))..))...))))..)))))........ (-30.14 = -30.54 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:14 2006