Locus 2038

Sequence ID 2L_DroMel_CAF1
Location 5,501,610 – 5,501,701
Length 91
Max. P 0.640991
window3282

overview

Window 2

Location 5,501,610 – 5,501,701
Length 91
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 89.56
Mean single sequence MFE -35.33
Consensus MFE -28.89
Energy contribution -29.03
Covariance contribution 0.14
Combinations/Pair 1.28
Mean z-score -2.04
Structure conservation index 0.82
SVM decision value 0.22
SVM RNA-class probability 0.640991
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5501610 91 - 22407834
CCAGAGCGAUCCAAUGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCGCUCUUCGGUUUGCACUGAAA-
...(((((((((((((((.....)))((((((((.((.......)).))))))))......)))).))))))))((((((....)))))).- ( -41.40)
>DroSec_CAF1 125279 91 - 1
CCAGAGCGAUCCAAUGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCUCUCUUCGGUUUGCACUCAAA-
.((((.(((......(((((((.(((.(((((((.((.......)).))))))))))...))..)))))......))).))))........- ( -33.70)
>DroSim_CAF1 132086 91 - 1
CCAGAGCGAUCCAAUGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCUCUCUUCGGUUUGCACUGAAA-
...(((.(((((((((((.....)))((((((((.((.......)).))))))))......)))).)))).)))((((((....)))))).- ( -35.60)
>DroEre_CAF1 123209 91 - 1
CCAGAGCGAUCCGACGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCUCUCUUCGGCGUGCACUGGAA-
((((.(((..((((.(((((((.(((.(((((((.((.......)).))))))))))...))..)))))......))))..))).))))..- ( -39.90)
>DroYak_CAF1 130156 92 - 1
CCAGAGCGAUCCAACGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAAGUUGUGGUCUCUCUUCAGCUUGCACUGAAAA
...(((.(((((((((((.....)))((((((((.((.......)).))))))))......)))).)))).)))(((((......))))).. ( -37.90)
>DroAna_CAF1 130391 89 - 1
CCAGAGCGAUCCG-CGCCGCCGGGCUCGGC-CCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUAAGGUUGUUUCCGAAACUCCACUGAAA-
.(((.(((..(((-.(((....))).)))(-(((.((.......)).))))..))).....(((..((......))..)))....)))...- ( -23.50)
>consensus
CCAGAGCGAUCCAACGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCUCUCUUCGGUUUGCACUGAAA_
...(((.(((((((((((.....)))((((((((.((.......)).))))))))......)))).)))).)))(((((......))))).. (-28.89 = -29.03 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:46 2006