Locus 203

Sequence ID 2L_DroMel_CAF1
Location 607,037 – 607,155
Length 118
Max. P 0.767135
window305

overview

Window 5

Location 607,037 – 607,155
Length 118
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 92.46
Mean single sequence MFE -27.95
Consensus MFE -22.54
Energy contribution -23.38
Covariance contribution 0.84
Combinations/Pair 1.06
Mean z-score -1.60
Structure conservation index 0.81
SVM decision value 0.52
SVM RNA-class probability 0.767135
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 607037 118 + 22407834
GUUGCUGUGGUCGCCCCGGCAGCAACAAGGCACUUGUAAAAAUACAUAAUUAAAUAGAGGUUUAAGUGGUUAUUAAAAGAGGAACAUGCUAUGUGUUUAACCAAACAAGUCCUAACCA
((((((((.(......).)))))))).(((.((((((............((((((....)))))).((((((..........(((((.....))))))))))).)))))))))..... ( -30.60)
>DroSec_CAF1 38473 114 + 1
GUUGCUGUGGUCGCCCCUGCAGCAACAAGGCACUUGUAAAAAUACAUAAUUAAAUCGAGGUUUAACUGGUUAUUAAAAAAGGAACGUGCUAUGUGUUUAACCAAACAAGUCCC----A
(((((((..(......)..)))))))..((.((((((..(((((((((.((((((....))))))((..((....))..))........)))))))))......)))))).))----. ( -30.10)
>DroSim_CAF1 36865 118 + 1
GUUGCUGUGGUCGCCCCUGCAGCAACAAGGCACUUGUAAAAAUACAUAAUUAAAUCGAGGUUUAACUGGUUAUUAAAAAAGGAACGUGCUAUGUGUUUAACCCAACAAGUCCCAACCA
(((((((..(......)..)))))))..((.((((((..(((((((((.((((((....))))))((..((....))..))........)))))))))......)))))).))..... ( -30.10)
>DroEre_CAF1 38935 118 + 1
GUUGCUGUGGUCGCCCCUGCAGCAAGCAGGCACUUGUAAAAAUACAUAAUUAAAUGGAGGUUUAACUGGUUAUUAAAAAAGGUACAUGCUAUGUGUUUAACCAAACAAGUCUUAACCA
.((((((..(......)..))))))..(((.((((((..((((.(((......)))...))))...((((((........(((....))).......)))))).)))))))))..... ( -24.66)
>DroYak_CAF1 38948 118 + 1
GUCGCUGUGGUCGCCCCUGCAGCAACCAGUCACUUGUAAAAAUACAUAAUUAAAUGGAGGCUUAACUGGUUAUUAAAAAAGGUACAUGCUAUGUGUUUAACCAAACAAGUCUUUACCA
...((((..(......)..))))..(((......((((....))))........)))((((((...((((((........(((....))).......))))))...))))))...... ( -24.30)
>consensus
GUUGCUGUGGUCGCCCCUGCAGCAACAAGGCACUUGUAAAAAUACAUAAUUAAAUCGAGGUUUAACUGGUUAUUAAAAAAGGAACAUGCUAUGUGUUUAACCAAACAAGUCCUAACCA
((((((((((......))))))))))..((.((((((............((((((....)))))).((((((.......((.......)).......)))))).)))))).))..... (-22.54 = -23.38 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:13 2006