Locus 2028

Sequence ID 2L_DroMel_CAF1
Location 5,489,302 – 5,489,394
Length 92
Max. P 0.933739
window3264

overview

Window 4

Location 5,489,302 – 5,489,394
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 77.38
Mean single sequence MFE -27.10
Consensus MFE -16.86
Energy contribution -18.23
Covariance contribution 1.37
Combinations/Pair 1.38
Mean z-score -2.01
Structure conservation index 0.62
SVM decision value 1.23
SVM RNA-class probability 0.933739
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5489302 92 - 22407834
ACAAGGAUAAGGGACAAGGGGUUGGGUUUCGAGCAUAUCUGUAUCUAUGGAUAU------GAAGGAACCCAGUAAGGGUUGUUAAUCCGGCGUAACUC
....((((.((.(((.....((((((((((...(((((((((....))))))))------)..))))))))))....))).)).)))).......... ( -30.00)
>DroSec_CAF1 113099 92 - 1
ACAAGGAUAAGGCACAAGGGGUUGGGUUCCGAGCAUAUCUGUAUCUAUGGAUAU------GAAGGAACCCAGUAAGGGUUGUUAAUCCGGCGUAACUC
....((((..((((.......(((((((((...(((((((((....))))))))------)..))))))))).......)))).)))).......... ( -29.74)
>DroSim_CAF1 119724 92 - 1
ACAAGGAUAAGGCACAAGGGGUUGGGUUCCGAGCAUAUCUGUAUCUAUGGAUAU------GAAGGAACCCAGUAAGGGUUGUUAAUCCGGCGUAACUC
....((((..((((.......(((((((((...(((((((((....))))))))------)..))))))))).......)))).)))).......... ( -29.74)
>DroEre_CAF1 110526 92 - 1
GCAAGGAUAAGGGACAAGGGGUUGGGUUUCAACCAUAUCUGUAUCUAUGGAUAU------GAAGGAACCCAGUAAGGGUUGUUAAUCCAGCGUAACUC
((..((((.((.(((.....((((((((((...(((((((((....))))))))------)..))))))))))....))).)).)))).))....... ( -28.60)
>DroYak_CAF1 117486 75 - 1
CCAGGGAUAAGGGACAAGGGGUU-----------------GUAUCUAUGGAUAU------GGAGGAACCCGGUAAGGGUUGUUAAUCCAGCGUAACUC
(((.(((((...(((.....)))-----------------.))))).)))...(------((((.(((((.....))))).)...))))......... ( -18.90)
>DroAna_CAF1 117598 97 - 1
GCAAGGGGUUGGGAUUAAGGAAAGGGAUACGAUACGGCCUAUAUACUCGUAUAUUUGUGCCGA-GGGCCCAGUAAGGGUUGCUAAUCCAGCGGAACUU
((...(((((((......................(((((.(((((....)))))..).)))).-.(((((.....))))).))))))).))....... ( -25.60)
>consensus
ACAAGGAUAAGGGACAAGGGGUUGGGUUCCGAGCAUAUCUGUAUCUAUGGAUAU______GAAGGAACCCAGUAAGGGUUGUUAAUCCAGCGUAACUC
....((((.((.(((.....((((((((((..........(((((....))))).........))))))))))....))).)).)))).......... (-16.86 = -18.23 +   1.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:30 2006